Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_147

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367275 to 368042 8514 mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368683 to 371935 8515 mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372141 to 374463 8516

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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368,252 - -0.7
368,256 + -0.1
368,266 - 1.2
368,390 - -0.4
368,394 - 1.2
368,411 - -0.0
368,412 - 0.3
368,413 + 0.0
368,455 + -0.7
368,583 - -2.2
368,699 - 0.9
368,710 - 1.5
368,725 - -0.7
369,151 - 8515 mRNA_147 0.14 0.9
369,618 + 8515 mRNA_147 0.29 -0.6
369,636 + 8515 mRNA_147 0.29 3.0
369,733 - 8515 mRNA_147 0.32 0.6
369,749 + 8515 mRNA_147 0.33 1.5
371,848 + 0.2
372,102 - 0.6
372,109 - 0.7
372,152 - 0.4
372,245 - -0.2
372,314 + -0.4
372,754 + 8516 mRNA_148 0.26 -2.5
372,778 + 8516 mRNA_148 0.27 1.3
372,838 - 8516 mRNA_148 0.30 0.5
372,849 + 8516 mRNA_148 0.30 -0.7
372,850 - 8516 mRNA_148 0.31 0.3
372,909 + 8516 mRNA_148 0.33 0.3