Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_141

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336645 to 339470 8508 mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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339,578 - 1.0
339,595 - 0.2
339,597 + 1.4
339,606 - 0.6
339,614 - -0.3
339,617 + 0.0
339,617 + 0.3
339,729 + 0.1
339,744 + 0.3
339,767 - 1.9
339,779 - 0.2
339,782 + -1.1
339,786 - -0.1
339,789 - 2.7
339,798 - 1.1
339,798 - 1.0
339,802 - 0.2
339,803 + 1.6
339,804 - -0.4
339,811 + 0.6
339,837 + 1.6
339,837 + 0.4
339,837 - 0.1
339,841 + 1.0
339,844 + -0.4
339,844 + 0.1
339,846 - 0.9
339,851 - -0.1
339,851 + 1.6
339,852 - 2.3
339,861 + 0.5
339,864 + 1.6
339,865 - 1.9
339,885 - 0.7
339,892 + 2.1
339,897 - 0.7
339,900 + 0.6
339,907 + 0.2
339,911 + -1.6
339,913 + 0.7
339,925 - -1.3
340,037 + -0.2
340,081 - -0.7
340,224 - 8509 mRNA_141 0.12 2.7
340,239 + 8509 mRNA_141 0.12 -0.6
341,286 + 8509 mRNA_141 0.62 0.2
341,520 - 8509 mRNA_141 0.73 -0.1
341,679 - 8509 mRNA_141 0.81 1.4
341,809 - 8509 mRNA_141 0.87 -3.7
341,977 - -0.0
342,072 + 0.2
342,127 + 1.1
342,129 + 1.3
342,131 - 1.8
342,144 + 0.6
342,149 - 1.3
342,167 + 0.4
342,171 - 1.2
342,177 + 0.1
342,187 - 0.9
342,220 - 1.7
342,230 - 0.2
342,230 - 0.2
342,248 - 0.3
342,249 + 1.4
342,250 - -1.6
342,250 + -0.1
342,274 + 1.0
342,293 - 1.7
342,309 - -0.6
342,313 + 0.9
342,317 - 0.0
342,326 - 1.2
342,328 - 1.5
342,328 - 0.4
342,330 - 0.6
342,337 - 1.9
342,342 + 1.7
342,344 + 1.4
342,344 + 1.0
342,353 + 0.9
342,476 + 0.5
342,477 + 2.0
342,487 + 0.5
342,488 - 1.9
342,491 - 0.2
342,493 - 2.1
342,550 - -0.5
342,591 - -0.9
342,611 - -1.3
342,619 - 0.6
342,620 + 0.8
342,626 + 0.4
342,639 - -1.2
342,652 + -1.2
342,742 - -0.1
342,750 - 0.9
342,759 - 0.5
342,761 + 0.7
342,762 + -0.5
342,791 - 3.0
342,793 + 0.6
342,808 - 0.4
342,811 + 0.5
342,884 - -1.6
342,951 + -1.3
342,996 - 1.9