Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_136

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323114 to 325275 8503 mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326050 to 327675 8504 mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328204 to 331764 8505

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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325,115 - 0.5
325,115 - -0.5
325,291 - 0.1
325,293 + 0.2
325,300 + 0.8
325,301 - -0.4
325,302 + 2.1
325,312 - -0.0
325,317 + 2.8
325,452 - 2.3
325,594 + 0.7
325,595 - 2.9
325,604 - 2.2
325,921 + 0.3
326,033 + 0.1
326,324 + 8504 mRNA_136 0.17 0.6
326,384 - 8504 mRNA_136 0.21 1.5
326,661 - 8504 mRNA_136 0.38 -1.6
326,837 + 8504 mRNA_136 0.48 0.4
326,915 + 8504 mRNA_136 0.53 2.1
326,937 + 8504 mRNA_136 0.55 0.8
326,970 - 8504 mRNA_136 0.57 -0.8
326,997 + 8504 mRNA_136 0.58 2.1
327,076 + 8504 mRNA_136 0.63 1.3
327,240 - 8504 mRNA_136 0.73 -0.3
327,253 + 8504 mRNA_136 0.74 0.2
327,259 + 8504 mRNA_136 0.74 0.2
327,335 - 8504 mRNA_136 0.79 2.6
327,359 - 8504 mRNA_136 0.81 1.7
327,504 + 8504 mRNA_136 0.89 -0.3
327,565 - 0.0
327,648 + -0.4
327,652 - 0.1
327,662 - 0.5
327,663 + 0.8
327,667 + 0.7
327,669 - 1.5
327,686 + 1.5
327,819 - 0.5
327,980 + 0.2
328,075 - 0.4
328,101 - 0.4
328,107 - 0.1
328,112 + 1.9
328,261 - -1.4
328,275 + 1.4
328,280 + 0.3