Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_125

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298374 to 299465 8492 mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299830 to 300571 8493 mRNA_126: 8494 - Hypothetical Protein, at 300775 to 301342 8494

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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298,884 - 8492 mRNA_124 0.47 0.7
298,891 + 8492 mRNA_124 0.47 2.8
299,205 - 8492 mRNA_124 0.76 1.5
299,216 + 8492 mRNA_124 0.77 -0.3
299,617 - 1.9
299,645 - 0.8
299,652 + 1.6
300,229 + 8493 mRNA_125 0.54 1.7
300,694 + 0.4
300,820 + 1.0
300,824 - -0.1
301,109 - 8494 mRNA_126 0.59 2.1
301,131 + 8494 mRNA_126 0.63 0.2
301,131 + 8494 mRNA_126 0.63 -0.5
301,232 - 8494 mRNA_126 0.80 1.0
301,245 - 8494 mRNA_126 0.83 0.2
301,246 + 8494 mRNA_126 0.83 1.4
301,265 + 8494 mRNA_126 0.86 2.0
301,279 + 8494 mRNA_126 0.89 1.5
301,304 + -0.6
301,313 + -0.2
301,350 + -0.5
301,542 + -0.2
301,550 + 0.9
301,554 + 2.3
301,564 + 0.0