Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_124

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296451 to 297684 8490 mRNA_123: 8491 - Hypothetical Protein, at 297739 to 298245 8491 mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298374 to 299465 8492 mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299830 to 300571 8493

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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297,757 - -0.9
297,769 + 0.2
297,812 - 8491 mRNA_123 0.14 1.6
297,840 - 8491 mRNA_123 0.20 -0.0
297,841 + 8491 mRNA_123 0.20 2.3
297,945 + 8491 mRNA_123 0.41 1.3
297,960 + 8491 mRNA_123 0.44 0.3
297,983 + 8491 mRNA_123 0.48 1.1
297,983 + 8491 mRNA_123 0.48 0.9
297,998 - 8491 mRNA_123 0.51 -0.8
298,005 - 8491 mRNA_123 0.52 2.6
298,142 - 8491 mRNA_123 0.79 -0.1
298,194 + 8491 mRNA_123 0.90 -0.7
298,203 + -0.1
298,225 + 0.3
298,233 + 1.0
298,241 + 1.8
298,335 - 0.8
298,356 + 1.3
298,791 - 8492 mRNA_124 0.38 0.2
298,884 - 8492 mRNA_124 0.47 0.7
298,891 + 8492 mRNA_124 0.47 2.8
299,205 - 8492 mRNA_124 0.76 1.5
299,216 + 8492 mRNA_124 0.77 -0.3
299,617 - 1.9
299,645 - 0.8
299,652 + 1.6
300,229 + 8493 mRNA_125 0.54 1.7