Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_122

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_121: 8489 - BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255], at 295395 to 296134 8489 mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296451 to 297684 8490 mRNA_123: 8491 - Hypothetical Protein, at 297739 to 298245 8491 mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298374 to 299465 8492

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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295,465 + 0.0
295,477 + 8489 mRNA_121 0.11 0.2
295,626 + 8489 mRNA_121 0.31 0.7
296,093 - -1.9
296,221 - 0.3
296,223 + 0.4
296,226 + 1.4
296,362 + 0.5
296,423 + -1.7
296,859 - 8490 mRNA_122 0.33 0.1
297,757 - -0.9
297,769 + 0.2
297,812 - 8491 mRNA_123 0.14 1.6
297,840 - 8491 mRNA_123 0.20 -0.0
297,841 + 8491 mRNA_123 0.20 2.3
297,945 + 8491 mRNA_123 0.41 1.3
297,960 + 8491 mRNA_123 0.44 0.3
297,983 + 8491 mRNA_123 0.48 1.1
297,983 + 8491 mRNA_123 0.48 0.9
297,998 - 8491 mRNA_123 0.51 -0.8
298,005 - 8491 mRNA_123 0.52 2.6
298,142 - 8491 mRNA_123 0.79 -0.1
298,194 + 8491 mRNA_123 0.90 -0.7
298,203 + -0.1
298,225 + 0.3
298,233 + 1.0
298,241 + 1.8
298,335 - 0.8
298,356 + 1.3