Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_114

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482 mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270395 to 274744 8483

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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266,777 + -0.5
266,894 - 0.6
266,900 + 0.4
266,900 + -0.5
267,130 - 8481 mRNA_113 0.13 1.2
267,140 - 8481 mRNA_113 0.16 -1.7
267,314 - 8481 mRNA_113 0.71 0.5
267,332 + 8481 mRNA_113 0.77 -0.9
267,340 - 8481 mRNA_113 0.79 -1.1
267,482 + 1.6
267,499 + 0.4
267,885 + -0.4
267,886 - 0.1
268,053 - 8482 mRNA_114 0.13 0.0
268,059 + 8482 mRNA_114 0.13 -1.8
268,554 + 8482 mRNA_114 0.35 -0.2
268,613 - 8482 mRNA_114 0.37 1.0
268,637 - 8482 mRNA_114 0.38 1.1
268,643 + 8482 mRNA_114 0.38 -1.4
268,648 - 8482 mRNA_114 0.39 -0.3
268,779 - 8482 mRNA_114 0.44 -0.4
268,785 + 8482 mRNA_114 0.45 0.7
268,794 + 8482 mRNA_114 0.45 -0.5
268,903 - 8482 mRNA_114 0.50 1.1
268,918 + 8482 mRNA_114 0.50 0.4
269,061 - 8482 mRNA_114 0.57 0.4
269,235 - 8482 mRNA_114 0.64 1.0
269,243 - 8482 mRNA_114 0.64 2.2
269,395 + 8482 mRNA_114 0.71 2.1
269,467 + 8482 mRNA_114 0.74 -0.9
269,797 - 8482 mRNA_114 0.88 1.9
269,885 - 0.8
269,917 - -1.1
270,081 - 1.4
270,083 - 0.6
270,230 + -0.2
270,245 + 0.2
270,248 + 2.1
270,256 + -0.0