Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_112

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260930 to 263760 8479 mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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263,436 + 8479 mRNA_111 0.89 2.2
263,490 + 0.1
263,492 + 1.3
263,503 + 1.0
263,503 + -0.2
263,504 + 0.9
263,507 + 0.6
263,517 - 0.4
263,519 - 0.6
263,539 + -1.1
263,613 + 0.6
263,625 - -0.4
263,641 - 0.5
263,663 + 0.9
263,672 + 1.8
263,683 + -0.2
263,786 + 1.2
263,798 - -0.1
263,822 + -0.2
263,859 + 0.7
263,865 + 1.5
263,875 + -0.1
263,924 - -2.7
264,050 + 0.8
264,089 - -0.4
264,418 + 0.2
264,544 + 8480 mRNA_112 0.14 0.1
264,554 + 8480 mRNA_112 0.14 -0.2
264,567 + 8480 mRNA_112 0.15 -2.3
264,992 + 8480 mRNA_112 0.30 0.4
265,001 - 8480 mRNA_112 0.30 -0.2
265,110 - 8480 mRNA_112 0.34 0.1
265,110 - 8480 mRNA_112 0.34 -0.4
265,110 - 8480 mRNA_112 0.34 -0.5
265,110 - 8480 mRNA_112 0.34 0.4
265,116 + 8480 mRNA_112 0.34 -0.7
265,116 + 8480 mRNA_112 0.34 1.1
265,116 + 8480 mRNA_112 0.34 0.0
265,117 + 8480 mRNA_112 0.34 0.2
265,132 - 8480 mRNA_112 0.35 0.7
265,436 + 8480 mRNA_112 0.45 1.5
265,542 - 8480 mRNA_112 0.49 -2.3
265,586 + 8480 mRNA_112 0.51 0.1
265,681 - 8480 mRNA_112 0.54 0.9
265,710 - 8480 mRNA_112 0.55 2.4
265,868 + 8480 mRNA_112 0.61 -0.0
265,875 - 8480 mRNA_112 0.61 -1.5
265,999 - 8480 mRNA_112 0.65 0.6
266,128 - 8480 mRNA_112 0.70 0.6
266,165 - 8480 mRNA_112 0.71 1.9
266,180 + 8480 mRNA_112 0.72 0.7
266,296 - 8480 mRNA_112 0.76 -1.2
266,589 - 8480 mRNA_112 0.86 -1.4
266,739 - -1.9
266,777 + -0.5
266,894 - 0.6
266,900 + 0.4
266,900 + -0.5
267,130 - 8481 mRNA_113 0.13 1.2
267,140 - 8481 mRNA_113 0.16 -1.7
267,314 - 8481 mRNA_113 0.71 0.5
267,332 + 8481 mRNA_113 0.77 -0.9
267,340 - 8481 mRNA_113 0.79 -1.1
267,482 + 1.6
267,499 + 0.4
267,885 + -0.4
267,886 - 0.1