Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_102

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243748 to 246867 8469 mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247531 to 248783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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246,765 + 1.1
246,820 + 0.2
246,821 - -1.1
247,050 + -0.7
247,075 - 0.2
247,094 - 1.1
247,125 + 0.4
247,146 - 3.2
247,147 - -0.3
247,147 + 0.8
247,164 + 0.7
247,165 - 0.5
247,170 + 0.9
247,180 + -0.8
247,762 + 8470 mRNA_102 0.18 2.4
247,948 - 8470 mRNA_102 0.33 0.1
248,083 - 8470 mRNA_102 0.44 0.5
248,427 - 8470 mRNA_102 0.72 -0.4
248,432 - 8470 mRNA_102 0.72 1.2
248,579 + 8470 mRNA_102 0.84 0.9
248,657 + 8470 mRNA_102 0.90 0.4
248,664 + 2.7
248,677 + -0.7
248,744 + -0.0
248,752 + -0.1
249,020 - 8471 mRNA_103 0.12 -0.3
249,179 - 8471 mRNA_103 0.29 1.3
249,180 - 8471 mRNA_103 0.29 3.2
249,257 - 8471 mRNA_103 0.37 -0.7
249,294 + 8471 mRNA_103 0.41 -0.5
249,356 + 8471 mRNA_103 0.47 0.8
249,626 - 8471 mRNA_103 0.75 -0.7
249,667 + 8471 mRNA_103 0.79 0.9
249,692 - 8471 mRNA_103 0.82 2.1
249,740 + 8471 mRNA_103 0.87 -0.2
249,768 + -0.3