Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_98

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229785 to 233167 8465 mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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232,980 + -1.9
232,995 - -0.2
233,157 - 0.1
233,237 + 0.8
233,256 - -1.3
233,256 - -1.0
233,263 - 1.0
233,276 + -0.3
233,282 - 3.2
233,290 + 3.7
233,290 + -1.2
233,290 + 0.1
233,298 - -0.5
233,298 + 0.1
233,298 - 0.4
233,301 + 1.2
233,301 - 2.6
233,301 - 0.1
233,302 + -0.8
233,315 + -0.1
233,316 - 0.2
233,316 + 0.3
233,317 - -0.4
233,317 - -1.8
233,319 - 0.4
233,320 - -0.1
233,321 + 1.5
233,321 - 0.6
233,321 - 0.2
233,323 - 1.2
233,323 - 0.2
233,324 + 0.0
233,324 + 0.2
233,325 + -0.0
233,325 - -0.1
233,326 + -0.5
233,329 + 0.7
233,332 + -1.4
233,335 + 1.0
233,336 + 0.4
233,337 + 0.4
233,337 + 0.8
233,350 + 2.7
233,350 + -1.0
233,354 - -0.5
233,359 + 0.5
233,365 - 0.6
233,365 - 0.6
233,365 + 0.5
233,375 - -0.4
233,379 + 0.3
233,383 + 0.2
233,387 - 0.6
233,404 + -0.3
233,404 + 0.5
233,408 - 1.6
233,436 - 0.9
233,436 - 0.8
233,436 - -0.7
233,437 - 0.7
233,441 + 1.0
233,442 - 0.3
233,443 - 1.7
233,444 + 0.2
233,446 - -0.2
233,448 - 1.3
233,450 + -2.2
233,451 + 1.6
233,452 + 2.1
233,459 - -2.0
233,488 - -0.2
233,491 - -1.6
233,507 + 0.6
233,512 - 1.3
233,518 - 0.6
233,520 - 1.6
233,523 + -1.1
233,529 - -1.3
233,539 - 0.2
233,541 + 0.9
233,549 + 1.7
233,551 + -0.8
233,559 - 2.0
233,560 + -0.6
233,568 + 0.9
233,571 - 3.2
233,573 + -1.2
233,613 + -1.0
233,657 - 0.9
233,706 + 0.6
233,726 + -1.6
233,851 - -0.8
233,852 + 2.2
233,859 - -0.1
233,865 + 0.0
234,006 - 8466 mRNA_98 0.17 1.6
234,139 - 8466 mRNA_98 0.34 1.3
234,284 - 8466 mRNA_98 0.52 0.4
234,293 + 8466 mRNA_98 0.53 0.2
234,459 + 8466 mRNA_98 0.74 0.7
234,600 + 0.6
234,613 + 0.5
234,733 - 0.3
234,750 + -0.7
234,765 + 1.0
234,773 - 0.7
234,904 - -0.3
234,909 + 2.2
234,911 - 0.1
234,914 + -0.5
234,915 - -0.2
234,919 + 0.4
234,920 + 0.4
234,923 - 3.3
234,926 + 0.5
234,926 + -0.3
234,927 - 0.5
234,932 - -0.8
234,935 + -0.4
234,936 + 1.5
234,940 - 0.4
234,941 + 0.1
234,941 + 1.9
234,942 + 0.9
234,943 + 0.4
234,970 - 0.1
234,984 - -0.6
234,985 + -0.0
234,991 - 3.3
234,999 + 0.3
234,999 + 1.3
235,005 + 0.0
235,007 - 0.3
235,011 - -0.3
235,013 + 2.7
235,016 - 0.9
235,016 - -0.7
235,019 - 0.6
235,019 + -0.5
235,024 + 0.3
235,026 - -2.3
235,040 - 0.8
235,041 + 3.0
235,048 - 0.0
235,057 - -0.0
235,061 - 0.7
235,062 - 1.5
235,072 - 1.7
235,077 + 0.7
235,078 - 0.5
235,080 - 0.2
235,080 - 0.9
235,081 + 0.4
235,081 + -0.9
235,085 - 0.3
235,085 - 3.1
235,089 - -0.2
235,091 + 1.7
235,092 - 0.1
235,096 + 1.4
235,104 + 0.7
235,135 - 3.7
235,141 - -1.0
235,141 - -1.0
235,144 - 0.2
235,146 + 2.5
235,147 + 1.2
235,147 - -0.8
235,148 - -0.8
235,150 - 0.9
235,152 - -0.6
235,152 + 0.5
235,160 + -0.2
235,165 - 0.3
235,183 + -1.7
235,195 - 1.5
235,206 - -0.0
235,211 + 2.1
235,211 + 0.2
235,212 + -0.2
235,259 - 0.0
235,260 - -1.0
235,276 - 3.1
235,277 - 0.6
235,279 - 0.1
235,280 + 0.7
235,280 - 0.9
235,281 + -1.0
235,281 + -0.7
235,290 - 0.6
235,291 - 1.2
235,292 + 1.4
235,293 - -0.8
235,297 - 1.2
235,299 - 0.9
235,301 - 0.3
235,302 + 0.8
235,308 - 2.6
235,308 + -1.5
235,311 - 1.6
235,314 - 1.2
235,470 + -1.0
235,486 - -0.0
235,495 + -1.7
235,616 - -0.1