Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_94

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219909 to 221427 8461 mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221579 to 223787 8462 mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224693 to 228325 8463

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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221,592 - 0.9
221,611 + 0.6
221,664 + -0.4
221,749 + 0.7
222,058 + 8462 mRNA_94 0.22 -0.2
222,064 - 8462 mRNA_94 0.22 1.2
222,611 - 8462 mRNA_94 0.47 1.3
222,772 + 8462 mRNA_94 0.54 0.2
222,883 - 8462 mRNA_94 0.59 0.9
223,063 - 8462 mRNA_94 0.67 0.2
223,344 - 8462 mRNA_94 0.80 0.0
223,668 - -0.4
223,938 - -0.5
223,947 + -0.1
223,958 - -0.9
223,972 - 1.3
223,985 + 1.6
223,989 + 0.1
223,991 + 0.8
223,993 + -2.1
223,999 - 0.0
224,011 - 0.5
224,011 - 1.7
224,032 - 1.0
224,035 + -0.9
224,084 - -0.8
224,099 + 1.3
224,105 + 0.0
224,111 + 0.5
224,145 - 0.1
224,232 + 2.7
224,240 + -1.0
224,254 - 0.2
224,268 + 4.5
224,275 - 0.1
224,279 + -0.7
224,284 - -0.3
224,296 + 1.2
224,332 - 0.4
224,334 - 0.6
224,339 + 0.1
224,348 - 0.9
224,356 + 0.4
224,356 - -0.0
224,359 + -1.2
224,361 + -0.0
224,362 + 1.3
224,365 - 1.3
224,369 + 0.3
224,369 + -2.1
224,376 - -0.2
224,381 - -1.0
224,383 + 0.7
224,387 + 2.6
224,387 + -2.0
224,393 - -0.3
224,410 - 0.6
224,413 + 0.3
224,448 - 2.2
224,451 + 1.5
224,451 - -2.6
224,453 + -0.1
224,456 + -0.0
224,456 + 1.0
224,458 - 0.9
224,488 + 0.4
224,614 + 1.2
224,720 + -0.5