Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_88

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207025 to 210193 8455 mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210659 to 212272 8456

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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209,692 - 8455 mRNA_87 0.84 0.6
209,713 + 8455 mRNA_87 0.85 -0.3
209,740 - 8455 mRNA_87 0.86 -0.3
209,807 + 8455 mRNA_87 0.88 -0.4
209,891 + -0.6
210,158 - -0.4
210,162 + 0.2
210,167 - 0.1
210,173 - 0.0
210,176 + 0.3
210,179 - -1.3
210,179 - 0.4
210,307 + -0.1
210,320 - 1.1
210,321 - 2.1
210,337 + -1.8
210,345 + -0.0
210,368 - 1.1
210,399 - -0.2
210,407 - -0.5
210,418 + -2.0
210,431 + 0.3
210,439 - 0.1
210,449 - -0.7
210,453 - -0.7
210,460 - -0.1
210,476 - -0.7
210,487 + -2.1
210,546 - -0.2
210,568 + -1.3
210,579 + -0.5
210,593 - 2.4
210,600 + 1.2
210,603 - 1.3
210,604 + 1.2
210,610 - 1.3
210,628 + -0.6
210,630 + 0.6
210,637 + -0.2
210,639 - 2.6
210,639 + 1.0
210,645 + 0.9
210,654 - -2.4
210,662 + 1.2
210,663 + 0.1
210,672 + 0.1
210,684 - -2.1
210,772 + -0.9
210,794 + 0.5
210,797 - 1.6
211,078 + 8456 mRNA_88 0.26 -3.0
211,503 + 8456 mRNA_88 0.52 0.0
211,523 + 8456 mRNA_88 0.54 0.2
211,771 - 8456 mRNA_88 0.69 0.3
211,778 + 8456 mRNA_88 0.69 0.7
212,220 + 1.9
212,226 + 0.6
212,375 - -0.3
212,410 - 0.5
212,494 + 0.9
212,502 - 0.9
212,504 - 1.7
212,508 + -0.3
212,512 - 0.5
212,524 + 0.9
212,544 - 1.9
212,623 + 1.1
212,623 + 0.7
212,641 + 0.7
212,645 + -2.3
212,652 + 0.3
212,652 - 0.5
212,658 + 0.3
212,663 - 1.6
212,669 + -2.2
212,670 - 0.2
212,677 - 0.2
212,695 - -1.3
212,695 + -0.2
212,801 - 0.3
212,807 + -0.8
212,811 + -0.3
212,821 + 0.6
212,835 - 1.3
212,844 - -1.2
212,853 + -0.1
212,855 + -0.4
212,873 + 0.4
212,875 - -0.5
212,880 + -1.2
212,880 + 0.5
212,900 - 3.7
212,901 - 2.8
212,906 - -0.3
212,933 - -0.3
212,940 - -0.0
212,950 - -2.7
212,961 - -0.1
212,983 + 1.5
213,005 - -0.7
213,025 - 1.3
213,029 + -0.3
213,039 - 1.8
213,043 + -0.9
213,053 + 0.8
213,059 - 0.9
213,066 - -0.6
213,067 + 3.1
213,073 + 0.4
213,074 + 0.0
213,099 + 0.3
213,110 - 0.8
213,112 + 1.4
213,118 + -0.3
213,122 + 0.2
213,125 - 0.5
213,126 + 2.8
213,126 + 0.5
213,127 - 0.2
213,139 + -0.1
213,141 - -0.3
213,156 + -0.0
213,158 + 0.2
213,159 + -0.0
213,165 - 0.9
213,168 - 1.3
213,175 - 1.7