Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_85

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_84: 8452 - K01522 FHIT bis(5'-adenosyl)-triphosphatase, at 201823 to 202716 8452 mRNA_85: 8453 - BLAST glutamine synthetase [Sanghuangporus baumii], at 203010 to 204516 8453 mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204818 to 206685 8454

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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202,233 + 8452 mRNA_84 0.46 -0.1
202,687 - -1.9
202,699 - -0.4
202,703 - -0.0
202,705 + -0.8
202,930 + 2.2
203,111 + -0.5
203,119 - -1.9
203,124 - -0.4
203,126 + 1.4
203,403 + 8453 mRNA_85 0.26 -0.6
203,409 + 8453 mRNA_85 0.26 -0.5
203,454 - 8453 mRNA_85 0.29 2.0
203,695 - 8453 mRNA_85 0.45 0.2
203,771 - 8453 mRNA_85 0.50 0.9
204,184 - 8453 mRNA_85 0.78 0.3
204,287 + 8453 mRNA_85 0.85 0.0
204,288 - 8453 mRNA_85 0.85 1.4
204,696 - 2.6
204,907 - -0.6
205,019 - 8454 mRNA_86 0.11 0.7
205,273 - 8454 mRNA_86 0.24 2.4
205,322 + 8454 mRNA_86 0.27 0.8