Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_81

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_80: 8448 - K04911 KCNH8 potassium voltage-gated channel Eag-related subfamily H member 8, at 189215 to 191649 8448 mRNA_81: 8449 - K12176 COPS2, CSN2, TRIP15 COP9 signalosome complex subunit 2, at 191913 to 194364 8449 mRNA_82: 8450 - KOG0519 Sensory transduction histidine kinase, at 194842 to 197479 8450

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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191,038 - 8448 mRNA_80 0.75 -0.0
191,240 - 8448 mRNA_80 0.83 0.5
191,348 + 8448 mRNA_80 0.88 0.2
191,501 + 0.6
191,522 + 1.3
191,690 + 0.3
191,721 + 0.0
191,810 + 0.9
192,102 + 1.7
192,128 + -1.9
192,564 - 8449 mRNA_81 0.27 3.3
192,571 + 8449 mRNA_81 0.27 2.1
193,463 + 8449 mRNA_81 0.63 0.1
193,652 - 8449 mRNA_81 0.71 -1.5
194,112 - 8449 mRNA_81 0.90 -0.9
194,118 - 8449 mRNA_81 0.90 -1.4
194,119 - -0.1
194,129 + 0.1
194,145 + 0.9
194,431 - -0.5
194,435 - -1.8
194,573 - 3.0
194,719 + 0.2
194,722 - 0.4
194,723 + -0.0
194,723 - 1.8
194,739 + 0.7
194,755 + 3.3
194,890 - 0.1
194,890 - -0.1
194,901 + 0.5
195,049 - -2.0
195,329 + 8450 mRNA_82 0.18 2.5
195,332 - 8450 mRNA_82 0.19 0.9
195,355 + 8450 mRNA_82 0.19 -0.2