Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_74

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169827 to 173814 8441 mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174089 to 180350 8442 mRNA_75: 8443 - K00606 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 180761 to 182108 8443

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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173,174 - 8441 mRNA_73 0.84 0.0
173,424 - -1.4
173,424 + 2.5
173,518 - -0.5
173,553 - 0.4
173,837 + -2.2
173,862 + 2.9
174,086 - -0.9
174,096 - 0.2
174,298 + 0.4
174,298 + 0.5
174,532 + 2.1
174,678 + 0.6
175,095 + 8442 mRNA_74 0.16 0.0
175,157 - 8442 mRNA_74 0.17 1.3
175,289 - 8442 mRNA_74 0.19 1.9
175,299 + 8442 mRNA_74 0.19 0.3
175,299 + 8442 mRNA_74 0.19 0.3
175,316 + 8442 mRNA_74 0.20 0.0
175,319 - 8442 mRNA_74 0.20 -1.0
175,385 - 8442 mRNA_74 0.21 0.4
175,451 - 8442 mRNA_74 0.22 0.2
175,644 - 8442 mRNA_74 0.25 -0.4
175,761 - 8442 mRNA_74 0.27 0.1
175,765 - 8442 mRNA_74 0.27 -0.6
176,077 + 8442 mRNA_74 0.32 -1.7
176,138 + 8442 mRNA_74 0.33 0.4
176,139 + 8442 mRNA_74 0.33 0.9
176,147 + 8442 mRNA_74 0.33 -1.2
176,161 + 8442 mRNA_74 0.33 2.4
176,337 - 8442 mRNA_74 0.36 1.0
176,372 - 8442 mRNA_74 0.36 -0.4
176,389 - 8442 mRNA_74 0.37 0.1
176,396 + 8442 mRNA_74 0.37 0.1
176,475 - 8442 mRNA_74 0.38 -0.8
176,657 - 8442 mRNA_74 0.41 0.8
176,777 - 8442 mRNA_74 0.43 1.6
177,387 + 8442 mRNA_74 0.53 -0.5
177,680 + 8442 mRNA_74 0.57 0.5
177,811 - 8442 mRNA_74 0.59 -0.0
177,820 - 8442 mRNA_74 0.60 0.1
177,921 - 8442 mRNA_74 0.61 1.3
178,039 + 8442 mRNA_74 0.63 2.0
178,086 - 8442 mRNA_74 0.64 0.5
178,139 - 8442 mRNA_74 0.65 1.5
178,177 - 8442 mRNA_74 0.65 -0.0
178,220 + 8442 mRNA_74 0.66 0.4
178,225 + 8442 mRNA_74 0.66 0.1
178,264 + 8442 mRNA_74 0.67 2.0
178,348 - 8442 mRNA_74 0.68 -1.5
178,365 - 8442 mRNA_74 0.68 0.3
178,370 + 8442 mRNA_74 0.68 -0.7
178,377 + 8442 mRNA_74 0.68 0.4
178,568 + 8442 mRNA_74 0.72 0.9
178,607 + 8442 mRNA_74 0.72 1.2
178,796 - 8442 mRNA_74 0.75 -2.8
178,945 + 8442 mRNA_74 0.78 1.2
179,244 + 8442 mRNA_74 0.82 0.2
179,397 + 8442 mRNA_74 0.85 1.3
179,411 + 8442 mRNA_74 0.85 -0.3
179,415 + 8442 mRNA_74 0.85 2.0
179,537 - 8442 mRNA_74 0.87 0.6
180,123 - 1.0
180,125 - -1.1
180,135 + 1.3
180,143 - -0.3
180,149 + -0.1
180,430 + 0.0
180,431 - 1.5
180,435 - -0.5
180,437 - 1.1
180,448 - 0.2
180,455 + -1.4
180,586 - 0.2
180,721 + 0.9
180,893 - 1.6
180,894 + -0.3
181,040 - 8443 mRNA_75 0.21 1.4