Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_67

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_66: 8434 - K15118 SLC25A38 solute carrier family 25, member 38, at 154666 to 156000 8434 mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156273 to 158120 8435 mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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155,507 + 8434 mRNA_66 0.63 -0.1
155,513 - 8434 mRNA_66 0.63 1.9
155,516 + 8434 mRNA_66 0.64 0.2
155,629 + 8434 mRNA_66 0.72 0.7
155,729 + 8434 mRNA_66 0.80 0.7
156,004 - 1.2
156,035 + 1.4
156,173 + 0.5
156,304 + 0.3
156,319 + 1.7
156,334 - 0.1
156,617 + 8435 mRNA_67 0.19 0.6
157,257 - 8435 mRNA_67 0.53 1.3
157,262 - 8435 mRNA_67 0.54 -1.2
157,297 - 8435 mRNA_67 0.55 1.5
157,309 + 8435 mRNA_67 0.56 -0.9
157,309 + 8435 mRNA_67 0.56 -0.9
157,453 + 8435 mRNA_67 0.64 0.9
157,467 - 8435 mRNA_67 0.65 2.9
157,482 - 8435 mRNA_67 0.65 0.7
157,655 + 8435 mRNA_67 0.75 1.4
157,835 - 8435 mRNA_67 0.85 1.9
157,966 - 0.1
158,031 + 0.9
158,054 + 0.9
158,069 - -0.2
158,176 + -0.9
158,177 - -0.5
158,179 - 0.7
158,183 - 0.2
158,192 - 1.2
158,193 + -0.4
158,193 + -0.1
158,196 - 1.1
158,296 + 1.3
158,320 - 1.2
158,333 + 2.1
158,341 - 0.2
158,347 - 0.1
158,387 + 1.4
158,636 + -0.8
158,639 - 0.3
158,650 - 2.6
158,678 + -0.3
158,949 - -0.2
159,101 - 0.8