Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_63

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_62: 8430 - HMMPfam-HPP family-PF04982, at 145631 to 146829 8430 mRNA_63: 8431 - K01800 maiA, GSTZ1 maleylacetoacetate isomerase, at 147081 to 148199 8431 mRNA_64: 8432 - HMMPfam-Transcription initiation factor TFIID component TAF4 family-PF05236, at 148573 to 150625 8432

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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146,200 + 8430 mRNA_62 0.47 -0.9
146,202 - 8430 mRNA_62 0.48 2.1
146,370 - 8430 mRNA_62 0.62 0.2
146,493 + 8430 mRNA_62 0.72 0.3
146,518 - 8430 mRNA_62 0.74 0.2
146,763 + 0.0
146,959 - 0.6
147,238 + 8431 mRNA_63 0.14 0.5
147,279 - 8431 mRNA_63 0.18 1.6
147,308 + 8431 mRNA_63 0.20 1.7
147,574 + 8431 mRNA_63 0.44 2.0
148,110 - -1.7
148,151 + 0.1
148,306 + 2.8
148,419 - 0.7
148,426 - -0.5
148,435 - 0.4
148,437 + 0.2
148,448 - 0.6