Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_62

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_61: 8429 - SUPERFAMILY--SSF52047, at 143371 to 144965 8429 mRNA_62: 8430 - HMMPfam-HPP family-PF04982, at 145631 to 146829 8430 mRNA_63: 8431 - K01800 maiA, GSTZ1 maleylacetoacetate isomerase, at 147081 to 148199 8431

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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144,635 + 8429 mRNA_61 0.79 -1.5
144,738 + 8429 mRNA_61 0.86 -1.2
144,862 - 0.9
144,870 + 0.8
144,873 - 2.3
144,880 + -2.0
144,881 - 1.6
145,005 + -1.1
145,026 - 0.2
145,033 + 0.1
145,043 - 2.4
145,047 - 0.2
145,049 + -1.2
145,175 - 2.9
145,201 + 0.8
145,206 - 1.0
145,337 + 0.7
145,344 - -0.0
145,344 + 1.5
145,350 + 0.0
145,453 + 0.5
145,471 + -2.3
145,476 - 0.2
145,483 - 0.4
145,493 - -0.2
145,495 + 2.0
145,632 + 0.0
145,640 + -1.3
145,645 + 1.8
145,788 - 8430 mRNA_62 0.13 0.0
145,955 + 8430 mRNA_62 0.27 0.5
146,200 + 8430 mRNA_62 0.47 -0.9
146,202 - 8430 mRNA_62 0.48 2.1
146,370 - 8430 mRNA_62 0.62 0.2
146,493 + 8430 mRNA_62 0.72 0.3
146,518 - 8430 mRNA_62 0.74 0.2
146,763 + 0.0
146,959 - 0.6
147,238 + 8431 mRNA_63 0.14 0.5
147,279 - 8431 mRNA_63 0.18 1.6
147,308 + 8431 mRNA_63 0.20 1.7
147,574 + 8431 mRNA_63 0.44 2.0