Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_51

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_50: 8418 - KOG1611 Predicted short chain-type dehydrogenase, at 118975 to 119840 8418 mRNA_51: 8419 - K10392 KIF1 kinesin family member 1, at 120072 to 126065 8419 mRNA_52: 8420 - Hypothetical Protein, at 126119 to 126700 8420 mRNA_53: 8421 - K03014 RPB6, POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2, at 126911 to 127593 8421

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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119,302 + 8418 mRNA_50 0.38 3.8
119,387 - 8418 mRNA_50 0.48 -0.0
119,413 + 8418 mRNA_50 0.51 0.3
119,416 - 8418 mRNA_50 0.51 0.3
119,416 - 8418 mRNA_50 0.51 -0.1
119,417 - 8418 mRNA_50 0.51 2.7
119,422 + 8418 mRNA_50 0.52 -1.7
119,422 + 8418 mRNA_50 0.52 1.4
119,600 + 8418 mRNA_50 0.72 -0.0
119,707 - 8418 mRNA_50 0.85 -2.7
119,957 + -0.6
120,035 + -0.6
120,142 - -3.5
120,383 + 0.0
120,401 - 0.6
120,434 - 0.3
120,549 + -0.6
120,695 - 8419 mRNA_51 0.10 -0.2
120,744 + 8419 mRNA_51 0.11 0.8
121,182 - 8419 mRNA_51 0.19 1.4
121,438 - 8419 mRNA_51 0.23 -0.9
121,447 - 8419 mRNA_51 0.23 -0.2
121,579 - 8419 mRNA_51 0.25 -1.2
121,616 + 8419 mRNA_51 0.26 -0.9
121,711 + 8419 mRNA_51 0.27 0.1
122,154 - 8419 mRNA_51 0.35 2.9
122,332 - 8419 mRNA_51 0.38 0.9
122,347 + 8419 mRNA_51 0.38 1.5
122,637 + 8419 mRNA_51 0.43 -1.9
122,946 + 8419 mRNA_51 0.48 1.5
122,958 - 8419 mRNA_51 0.48 -0.8
123,078 - 8419 mRNA_51 0.50 2.5
123,092 + 8419 mRNA_51 0.50 -0.9
123,216 + 8419 mRNA_51 0.52 1.1
123,233 - 8419 mRNA_51 0.53 1.3
123,836 - 8419 mRNA_51 0.63 0.3
124,151 - 8419 mRNA_51 0.68 -2.2
124,160 - 8419 mRNA_51 0.68 -0.1
124,411 - 8419 mRNA_51 0.72 1.1
124,593 - 8419 mRNA_51 0.75 -1.0
124,664 + 8419 mRNA_51 0.77 0.0
124,766 + 8419 mRNA_51 0.78 -1.4
124,808 - 8419 mRNA_51 0.79 0.2
124,975 + 8419 mRNA_51 0.82 0.5
125,015 - 8419 mRNA_51 0.82 0.3
125,052 - 8419 mRNA_51 0.83 0.9
125,118 + 8419 mRNA_51 0.84 1.2
125,121 - 8419 mRNA_51 0.84 -0.8
125,156 - 8419 mRNA_51 0.85 -1.1
125,162 + 8419 mRNA_51 0.85 0.4
125,328 + 8419 mRNA_51 0.88 1.1
125,450 - 8419 mRNA_51 0.90 -0.0
125,563 - -1.9
125,964 + 0.3
126,009 - 1.5
126,011 + -0.1
126,151 + 0.6
126,158 + 0.1
126,297 + 8420 mRNA_52 0.31 1.1
126,298 - 8420 mRNA_52 0.31 -1.9
126,314 + 8420 mRNA_52 0.34 0.6
126,324 + 8420 mRNA_52 0.35 1.5
126,324 + 8420 mRNA_52 0.35 0.3
126,425 - 8420 mRNA_52 0.53 2.3
126,428 - 8420 mRNA_52 0.53 -2.8
126,430 - 8420 mRNA_52 0.53 1.2
126,437 - 8420 mRNA_52 0.55 0.3
126,448 + 8420 mRNA_52 0.57 -0.4
126,452 + 8420 mRNA_52 0.57 -0.1