Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_50

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_49: 8417 - K03133 TAF9B, TAF9 transcription initiation factor TFIID subunit 9B, at 117701 to 118562 8417 mRNA_50: 8418 - KOG1611 Predicted short chain-type dehydrogenase, at 118975 to 119840 8418 mRNA_51: 8419 - K10392 KIF1 kinesin family member 1, at 120072 to 126065 8419

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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118,675 - 0.7
118,684 + 0.2
118,823 - 1.0
118,865 + 2.2
118,874 + -0.2
118,985 - -0.9
119,302 + 8418 mRNA_50 0.38 3.8
119,387 - 8418 mRNA_50 0.48 -0.0
119,413 + 8418 mRNA_50 0.51 0.3
119,416 - 8418 mRNA_50 0.51 0.3
119,416 - 8418 mRNA_50 0.51 -0.1
119,417 - 8418 mRNA_50 0.51 2.7
119,422 + 8418 mRNA_50 0.52 -1.7
119,422 + 8418 mRNA_50 0.52 1.4
119,600 + 8418 mRNA_50 0.72 -0.0
119,707 - 8418 mRNA_50 0.85 -2.7
119,957 + -0.6
120,035 + -0.6
120,142 - -3.5
120,383 + 0.0
120,401 - 0.6
120,434 - 0.3
120,549 + -0.6
120,695 - 8419 mRNA_51 0.10 -0.2
120,744 + 8419 mRNA_51 0.11 0.8