Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_47

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415 mRNA_48: 8416 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 116348 to 117395 8416

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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113,624 + 8414 mRNA_46 0.80 -0.4
113,665 - 8414 mRNA_46 0.82 -0.2
113,686 - 8414 mRNA_46 0.82 -0.5
113,715 - 8414 mRNA_46 0.83 1.1
113,851 + 8414 mRNA_46 0.87 0.4
113,858 + 8414 mRNA_46 0.88 1.0
114,191 + 2.0
114,192 + -0.2
114,197 + 1.0
114,265 + -0.0
114,279 + 1.5
114,605 + -0.1
114,855 - 8415 mRNA_47 0.26 1.6
114,932 + 8415 mRNA_47 0.34 -0.8
114,935 - 8415 mRNA_47 0.34 -0.9
115,004 + 8415 mRNA_47 0.41 0.7
115,174 - 8415 mRNA_47 0.58 -1.0
115,308 + 8415 mRNA_47 0.71 2.9
115,372 - 8415 mRNA_47 0.77 1.7
115,609 - -1.1
115,729 + 0.9
115,808 - -0.7
115,835 + 2.2
115,866 - -0.2
115,920 - 1.1
115,921 + 0.6
115,922 - 0.9
115,931 + -1.9
115,945 + 0.6
115,954 - -0.2
115,969 + 0.2
115,972 + 2.1
115,980 - 0.1
115,988 + 1.0
115,994 + 0.7
115,995 - 1.1
115,998 + 1.8
116,003 + 0.6
116,030 + -0.4
116,037 - 1.0
116,040 + 0.2
116,047 - 0.5
116,052 + -0.4
116,081 + 0.9
116,081 + 0.0
116,154 - 0.7
116,154 + -0.6
116,186 + 0.1
116,192 - 0.2
116,198 + -0.1
116,199 + 0.0
116,231 - 2.2
116,235 + -0.7
116,242 + -0.1
116,270 + 1.0
116,376 - 0.8
116,402 - 0.6
116,467 - 8416 mRNA_48 0.11 -1.0
116,564 - 8416 mRNA_48 0.21 0.6