Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_43

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101957 to 104570 8410 mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104762 to 105972 8411 mRNA_44: 8412 - Hypothetical Protein, at 106197 to 108340 8412

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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104,618 - -0.1
104,620 - -0.4
104,625 - 1.2
104,628 + 0.5
104,631 - -0.6
104,819 + -1.2
104,833 + 1.7
104,833 + 2.8
104,833 + 0.1
104,833 + 2.7
104,836 - -0.1
104,837 + 1.4
104,918 - 8411 mRNA_43 0.13 -2.2
104,941 + 8411 mRNA_43 0.15 0.6
105,039 - 8411 mRNA_43 0.23 2.4
105,079 - 8411 mRNA_43 0.26 -1.3
105,356 + 8411 mRNA_43 0.49 -0.0
105,361 + 8411 mRNA_43 0.49 -0.6
105,563 + 8411 mRNA_43 0.66 0.2
105,676 - 8411 mRNA_43 0.75 0.7
105,947 - 0.4
105,959 - -3.5
105,986 + 0.2
106,088 + 0.6
106,106 - -0.1
106,300 - -0.3
106,573 + 8412 mRNA_44 0.18 0.8
106,593 - 8412 mRNA_44 0.18 1.3
106,597 - 8412 mRNA_44 0.19 2.2
106,652 + 8412 mRNA_44 0.21 -1.2
106,796 - 8412 mRNA_44 0.28 3.0