Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_40

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96128 to 97227 8408 mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97555 to 101757 8409

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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95,176 - 8407 mRNA_39 0.35 -1.4
95,240 - 8407 mRNA_39 0.42 -1.3
95,274 - 8407 mRNA_39 0.46 2.3
95,475 - 8407 mRNA_39 0.68 2.2
95,528 - 8407 mRNA_39 0.74 0.6
95,566 - 8407 mRNA_39 0.78 -0.9
95,645 - 8407 mRNA_39 0.87 0.4
95,648 + 8407 mRNA_39 0.87 0.4
95,650 - 8407 mRNA_39 0.88 -0.6
95,707 + -0.5
95,713 - -0.3
95,750 + 2.0
95,770 + -0.6
95,809 - 0.5
95,818 - 0.6
95,823 + -0.1
96,060 + 1.2
96,091 - 2.1
96,091 + 0.8
96,109 + 1.9
96,270 - 8408 mRNA_40 0.13 0.2
96,357 - 8408 mRNA_40 0.21 1.9
96,366 + 8408 mRNA_40 0.22 -1.1
96,378 + 8408 mRNA_40 0.23 -0.5
96,410 - 8408 mRNA_40 0.26 1.1
96,462 + 8408 mRNA_40 0.30 0.1
96,560 + 8408 mRNA_40 0.39 0.9
96,621 - 8408 mRNA_40 0.45 0.4
96,674 - 8408 mRNA_40 0.50 0.3
96,754 - 8408 mRNA_40 0.57 0.8
96,912 - 8408 mRNA_40 0.71 0.5
97,093 - 8408 mRNA_40 0.88 -0.2
97,224 + 0.6