Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_39

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406 mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96128 to 97227 8408

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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93,961 + 8406 mRNA_38 0.50 0.4
93,965 - 8406 mRNA_38 0.50 0.7
94,027 + 8406 mRNA_38 0.57 -0.5
94,084 - 8406 mRNA_38 0.63 -0.2
94,169 - 8406 mRNA_38 0.72 -0.9
94,285 + 8406 mRNA_38 0.84 0.6
94,288 - 8406 mRNA_38 0.84 1.3
94,288 - 8406 mRNA_38 0.84 -0.6
94,445 + -0.8
94,491 + 1.7
94,515 - 1.3
94,534 - 0.7
94,631 - -0.5
94,635 - 0.9
94,683 - -0.8
94,686 - -1.3
94,687 + 1.3
94,687 + -3.4
94,800 + -0.2
94,800 + -0.4
94,803 - 0.0
94,803 - 0.7
94,803 - -1.1
94,890 + -0.4
94,917 + -0.0
94,917 - -0.1
94,943 + 1.2
94,975 + 8407 mRNA_39 0.12 0.0
94,980 + 8407 mRNA_39 0.13 -1.6
94,993 + 8407 mRNA_39 0.14 0.1
95,108 + 8407 mRNA_39 0.27 2.0
95,126 - 8407 mRNA_39 0.29 0.2
95,176 - 8407 mRNA_39 0.35 -1.4
95,240 - 8407 mRNA_39 0.42 -1.3
95,274 - 8407 mRNA_39 0.46 2.3
95,475 - 8407 mRNA_39 0.68 2.2
95,528 - 8407 mRNA_39 0.74 0.6
95,566 - 8407 mRNA_39 0.78 -0.9
95,645 - 8407 mRNA_39 0.87 0.4
95,648 + 8407 mRNA_39 0.87 0.4
95,650 - 8407 mRNA_39 0.88 -0.6
95,707 + -0.5
95,713 - -0.3
95,750 + 2.0
95,770 + -0.6
95,809 - 0.5
95,818 - 0.6
95,823 + -0.1
96,060 + 1.2
96,091 - 2.1
96,091 + 0.8
96,109 + 1.9
96,270 - 8408 mRNA_40 0.13 0.2
96,357 - 8408 mRNA_40 0.21 1.9
96,366 + 8408 mRNA_40 0.22 -1.1
96,378 + 8408 mRNA_40 0.23 -0.5
96,410 - 8408 mRNA_40 0.26 1.1
96,462 + 8408 mRNA_40 0.30 0.1
96,560 + 8408 mRNA_40 0.39 0.9
96,621 - 8408 mRNA_40 0.45 0.4
96,674 - 8408 mRNA_40 0.50 0.3
96,754 - 8408 mRNA_40 0.57 0.8