Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_38

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405 mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406 mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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92,688 - 8405 mRNA_37 0.82 1.6
92,822 + 8405 mRNA_37 0.88 1.4
92,857 - 8405 mRNA_37 0.90 0.0
92,974 + -0.4
93,195 - -0.7
93,285 - -2.5
93,293 + 1.0
93,314 - 1.2
93,315 + 1.8
93,318 + 0.3
93,447 - 0.9
93,455 + -1.4
93,461 + 1.6
93,485 + 0.1
93,512 + -0.4
93,614 + 8406 mRNA_38 0.13 1.2
93,645 - 8406 mRNA_38 0.16 0.7
93,776 - 8406 mRNA_38 0.30 1.8
93,813 + 8406 mRNA_38 0.34 -0.7
93,961 + 8406 mRNA_38 0.50 0.4
93,965 - 8406 mRNA_38 0.50 0.7
94,027 + 8406 mRNA_38 0.57 -0.5
94,084 - 8406 mRNA_38 0.63 -0.2
94,169 - 8406 mRNA_38 0.72 -0.9
94,285 + 8406 mRNA_38 0.84 0.6
94,288 - 8406 mRNA_38 0.84 1.3
94,288 - 8406 mRNA_38 0.84 -0.6
94,445 + -0.8
94,491 + 1.7
94,515 - 1.3
94,534 - 0.7
94,631 - -0.5
94,635 - 0.9
94,683 - -0.8
94,686 - -1.3
94,687 + 1.3
94,687 + -3.4
94,800 + -0.2
94,800 + -0.4
94,803 - 0.0
94,803 - 0.7
94,803 - -1.1
94,890 + -0.4
94,917 + -0.0
94,917 - -0.1
94,943 + 1.2
94,975 + 8407 mRNA_39 0.12 0.0
94,980 + 8407 mRNA_39 0.13 -1.6
94,993 + 8407 mRNA_39 0.14 0.1
95,108 + 8407 mRNA_39 0.27 2.0
95,126 - 8407 mRNA_39 0.29 0.2
95,176 - 8407 mRNA_39 0.35 -1.4
95,240 - 8407 mRNA_39 0.42 -1.3
95,274 - 8407 mRNA_39 0.46 2.3