Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_37

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405 mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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90,062 + 1.4
90,107 - -0.5
90,219 - -0.6
90,236 - -0.1
90,348 + 1.9
90,354 - 0.1
90,359 + 1.5
90,360 + 0.4
90,362 + -0.3
90,372 - -1.8
90,378 - 1.4
90,378 - 0.6
90,390 + 0.4
90,391 + 1.2
90,392 + 0.6
90,393 + 0.1
90,393 - 1.5
90,394 + 1.1
90,395 + -0.0
90,395 + 0.0
90,399 - -1.5
90,401 - -0.6
90,401 + 2.5
90,403 - 0.1
90,403 - 0.2
90,408 + 1.0
90,408 - 0.2
90,409 + -2.2
90,409 - 0.6
90,411 + -0.4
90,411 + 0.5
90,413 + 1.5
90,420 - -0.2
90,422 - 0.6
90,423 + -0.1
90,424 + 0.3
90,425 + -0.8
90,425 + 1.2
90,428 - -0.6
90,437 - 0.2
90,439 - 2.5
90,439 - -0.1
90,439 - 0.9
90,440 - 1.2
90,441 - 2.3
90,442 + 0.8
90,443 - 0.9
90,453 + 0.8
90,454 - -1.0
90,455 - -1.7
90,462 + 0.5
90,471 + -0.2
90,472 - -0.1
90,480 - -0.1
90,496 - -0.8
90,498 - -0.8
90,499 + -0.6
90,501 - 3.0
90,502 + 0.4
90,503 - 1.1
90,503 - 2.0
90,516 - -1.1
90,517 + 1.7
90,517 + 1.0
90,528 + -0.1
90,547 + 1.7
90,556 + 0.3
90,565 - 1.1
90,567 - 1.2
90,574 - 1.1
90,575 + 1.1
90,579 - 0.2
90,587 + -0.3
90,589 - 0.3
90,590 + -2.7
90,591 + 0.8
90,594 - 1.9
90,603 + 0.9
90,620 - 0.5
90,621 - -0.2
90,625 - -1.4
90,629 - 0.2
90,630 + -1.6
90,630 + -0.5
90,630 - 0.3
90,633 - 1.5
90,633 + 0.0
90,636 - -0.3
90,639 - -1.2
90,641 - -1.9
90,643 + -1.8
90,648 - -0.8
90,649 - 1.1
90,652 + 0.5
90,652 - 1.2
90,655 - 0.4
90,660 + 0.9
90,660 - -0.1
90,662 - -1.5
90,667 - 1.0
90,667 - 0.5
90,668 + 0.5
90,670 + 1.7
90,673 - 0.5
90,674 + -1.0
90,682 + 0.8
90,686 - 0.3
90,686 - -1.1
90,694 - 1.2
90,696 + -0.2
90,700 - -0.1
90,701 + 0.3
90,707 + -1.5
90,720 - 1.4
90,809 + 1.0
90,811 - -0.1
90,819 - 0.9
90,839 + 0.5
90,840 + 0.2
90,850 + -0.3
90,861 + -0.8
91,102 + 0.7
91,107 - 1.7
91,127 - 8405 mRNA_37 0.10 1.1
91,128 + 8405 mRNA_37 0.10 1.3
91,245 + 8405 mRNA_37 0.15 0.8
91,278 - 8405 mRNA_37 0.17 1.3
91,283 + 8405 mRNA_37 0.17 1.5
91,411 - 8405 mRNA_37 0.23 0.6
91,423 - 8405 mRNA_37 0.24 0.3
91,436 + 8405 mRNA_37 0.24 0.1
91,443 - 8405 mRNA_37 0.25 0.7
91,443 - 8405 mRNA_37 0.25 0.5
91,477 - 8405 mRNA_37 0.26 0.5
91,480 - 8405 mRNA_37 0.26 -0.1
91,697 - 8405 mRNA_37 0.36 1.2
91,700 + 8405 mRNA_37 0.36 0.0
91,715 - 8405 mRNA_37 0.37 1.1
91,718 + 8405 mRNA_37 0.37 0.6
91,726 - 8405 mRNA_37 0.38 1.8
91,740 + 8405 mRNA_37 0.38 0.6
91,840 + 8405 mRNA_37 0.43 0.8
91,840 + 8405 mRNA_37 0.43 0.5
92,005 - 8405 mRNA_37 0.50 1.2
92,009 - 8405 mRNA_37 0.51 -0.0
92,130 - 8405 mRNA_37 0.56 0.8
92,142 + 8405 mRNA_37 0.57 2.1
92,274 + 8405 mRNA_37 0.63 0.4
92,277 - 8405 mRNA_37 0.63 0.8
92,300 - 8405 mRNA_37 0.64 0.9
92,412 - 8405 mRNA_37 0.69 -0.6
92,688 - 8405 mRNA_37 0.82 1.6
92,822 + 8405 mRNA_37 0.88 1.4
92,857 - 8405 mRNA_37 0.90 0.0
92,974 + -0.4
93,195 - -0.7
93,285 - -2.5
93,293 + 1.0
93,314 - 1.2
93,315 + 1.8
93,318 + 0.3
93,447 - 0.9
93,455 + -1.4
93,461 + 1.6
93,485 + 0.1
93,512 + -0.4
93,614 + 8406 mRNA_38 0.13 1.2
93,645 - 8406 mRNA_38 0.16 0.7
93,776 - 8406 mRNA_38 0.30 1.8
93,813 + 8406 mRNA_38 0.34 -0.7
93,961 + 8406 mRNA_38 0.50 0.4
93,965 - 8406 mRNA_38 0.50 0.7
94,027 + 8406 mRNA_38 0.57 -0.5