Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_36

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403 mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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85,238 + 8403 mRNA_35 0.25 0.6
85,339 - 8403 mRNA_35 0.35 -0.1
85,394 + 8403 mRNA_35 0.40 2.1
85,502 + 8403 mRNA_35 0.50 -0.3
85,520 + 8403 mRNA_35 0.52 -0.9
85,661 - 8403 mRNA_35 0.66 0.7
85,670 + 8403 mRNA_35 0.67 1.3
85,827 - 8403 mRNA_35 0.82 2.0
85,833 + 8403 mRNA_35 0.82 2.1
85,943 - 1.4
85,947 + -0.5
85,985 - 0.2
86,078 - 3.9
86,113 - 0.4
86,148 - 0.3
86,211 - 0.6
86,266 + 1.3
86,389 - 0.6
86,443 + 1.4
86,511 - 0.2
86,538 + -0.5
86,598 + 8404 mRNA_36 0.10 -0.0
86,798 + 8404 mRNA_36 0.15 0.9
86,883 + 8404 mRNA_36 0.18 1.6
87,119 - 8404 mRNA_36 0.24 2.6
87,663 + 8404 mRNA_36 0.37 2.5
87,704 + 8404 mRNA_36 0.38 -1.5
87,753 - 8404 mRNA_36 0.40 -0.3
88,231 - 8404 mRNA_36 0.52 0.8
88,320 + 8404 mRNA_36 0.54 0.5
88,335 + 8404 mRNA_36 0.54 0.8
88,374 + 8404 mRNA_36 0.55 -1.4
88,453 - 8404 mRNA_36 0.57 0.3
88,465 + 8404 mRNA_36 0.58 2.0
88,727 + 8404 mRNA_36 0.64 2.4
88,912 - 8404 mRNA_36 0.69 1.4
89,310 + 8404 mRNA_36 0.79 3.6
89,544 + 8404 mRNA_36 0.85 -1.7
89,642 + 8404 mRNA_36 0.87 1.1
89,656 + 8404 mRNA_36 0.88 1.3
89,887 + -2.1
90,062 + 1.4
90,107 - -0.5
90,219 - -0.6
90,236 - -0.1
90,348 + 1.9
90,354 - 0.1
90,359 + 1.5
90,360 + 0.4
90,362 + -0.3
90,372 - -1.8
90,378 - 1.4
90,378 - 0.6
90,390 + 0.4
90,391 + 1.2
90,392 + 0.6
90,393 + 0.1
90,393 - 1.5
90,394 + 1.1
90,395 + -0.0
90,395 + 0.0
90,399 - -1.5
90,401 - -0.6
90,401 + 2.5
90,403 - 0.1
90,403 - 0.2
90,408 + 1.0
90,408 - 0.2
90,409 + -2.2
90,409 - 0.6
90,411 + -0.4
90,411 + 0.5
90,413 + 1.5
90,420 - -0.2
90,422 - 0.6
90,423 + -0.1
90,424 + 0.3
90,425 + -0.8
90,425 + 1.2
90,428 - -0.6
90,437 - 0.2
90,439 - 2.5
90,439 - -0.1
90,439 - 0.9
90,440 - 1.2
90,441 - 2.3
90,442 + 0.8
90,443 - 0.9
90,453 + 0.8
90,454 - -1.0
90,455 - -1.7
90,462 + 0.5
90,471 + -0.2
90,472 - -0.1
90,480 - -0.1
90,496 - -0.8
90,498 - -0.8
90,499 + -0.6
90,501 - 3.0
90,502 + 0.4
90,503 - 1.1
90,503 - 2.0
90,516 - -1.1
90,517 + 1.7
90,517 + 1.0
90,528 + -0.1
90,547 + 1.7
90,556 + 0.3
90,565 - 1.1
90,567 - 1.2
90,574 - 1.1
90,575 + 1.1
90,579 - 0.2
90,587 + -0.3
90,589 - 0.3
90,590 + -2.7
90,591 + 0.8
90,594 - 1.9
90,603 + 0.9
90,620 - 0.5
90,621 - -0.2
90,625 - -1.4
90,629 - 0.2
90,630 + -1.6
90,630 + -0.5
90,630 - 0.3
90,633 - 1.5
90,633 + 0.0
90,636 - -0.3
90,639 - -1.2
90,641 - -1.9
90,643 + -1.8
90,648 - -0.8
90,649 - 1.1
90,652 + 0.5
90,652 - 1.2
90,655 - 0.4
90,660 + 0.9
90,660 - -0.1
90,662 - -1.5
90,667 - 1.0
90,667 - 0.5
90,668 + 0.5
90,670 + 1.7
90,673 - 0.5
90,674 + -1.0
90,682 + 0.8
90,686 - 0.3
90,686 - -1.1
90,694 - 1.2
90,696 + -0.2
90,700 - -0.1
90,701 + 0.3
90,707 + -1.5
90,720 - 1.4
90,809 + 1.0
90,811 - -0.1
90,819 - 0.9
90,839 + 0.5
90,840 + 0.2
90,850 + -0.3
90,861 + -0.8
91,102 + 0.7
91,107 - 1.7
91,127 - 8405 mRNA_37 0.10 1.1
91,128 + 8405 mRNA_37 0.10 1.3