Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_33

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78127 to 78849 8400 mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79205 to 81384 8401 mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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78,998 - 1.5
79,008 - 1.1
79,008 + -0.0
79,024 - -0.3
79,034 + 2.0
79,036 + 1.9
79,041 - 1.0
79,042 + 0.8
79,043 + 0.2
79,190 + -0.2
79,324 + 0.5
79,480 + 8401 mRNA_33 0.13 2.0
79,728 - 8401 mRNA_33 0.24 1.2
80,085 - 8401 mRNA_33 0.40 -0.0
80,249 + 8401 mRNA_33 0.48 0.4
80,367 - 8401 mRNA_33 0.53 -1.5
80,374 - 8401 mRNA_33 0.54 0.3
80,616 - 8401 mRNA_33 0.65 2.4
80,626 + 8401 mRNA_33 0.65 1.4
80,666 - 8401 mRNA_33 0.67 1.0
80,977 + 8401 mRNA_33 0.81 0.2
81,101 + 8401 mRNA_33 0.87 -0.7
81,113 + 8401 mRNA_33 0.88 3.7
81,114 - 8401 mRNA_33 0.88 2.0
81,221 - -0.1
81,232 - -0.2
81,251 - 0.7
81,260 - 0.7
81,275 - 1.8
81,278 + 0.2
81,407 - 0.7
82,155 + 8402 mRNA_34 0.22 1.1