Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_13

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_12: 8380 - K12757 MYL12 myosin regulatory light chain 12, at 32509 to 33351 8380 mRNA_13: 8381 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 33714 to 35045 8381

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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32,719 + 8380 mRNA_12 0.25 0.8
32,723 - 8380 mRNA_12 0.25 0.2
32,952 + 8380 mRNA_12 0.53 -2.1
32,975 + 8380 mRNA_12 0.55 -0.4
33,006 + 8380 mRNA_12 0.59 0.9
33,354 + 1.5
33,828 - 1.4
33,901 + 8381 mRNA_13 0.14 1.1
34,328 - 8381 mRNA_13 0.46 -1.2
34,607 - 8381 mRNA_13 0.67 -0.3
34,610 + 8381 mRNA_13 0.67 -0.2
34,617 + 8381 mRNA_13 0.68 0.6
34,748 - 8381 mRNA_13 0.78 2.4
34,770 + 8381 mRNA_13 0.79 1.4
34,773 + 8381 mRNA_13 0.80 1.6
34,776 + 8381 mRNA_13 0.80 0.3
34,891 - 8381 mRNA_13 0.88 0.7
34,898 - 8381 mRNA_13 0.89 0.0
34,918 - 1.1
34,921 - -0.4
34,926 + -0.4
35,026 - -1.3
35,030 - -0.4
35,033 - 1.1
35,033 - 2.0
35,063 + 0.6
35,071 - 0.6
35,074 + 2.4
35,078 + 0.7
35,084 - 0.7
35,189 - 0.3
35,209 - -0.2
35,212 - -0.4
35,215 - -0.6
35,222 - -1.1
35,223 + 0.5
35,226 - -2.9
35,233 + 0.2
35,274 + 1.4
35,338 - -0.7
35,340 - -0.1
35,351 - 0.4
35,367 + -0.0
35,370 + 0.5
35,388 + 2.9
35,511 - 1.9
35,520 - 1.5
35,541 + 1.8
35,545 + -0.2
35,658 - 1.5
35,660 - -0.1
35,824 - -0.6
35,850 + -0.3