Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7: 8375 - HMMPfam-LIM-domain binding protein-PF01803,PRINTS-Proline rich extensin signature-PR01217, at 20174 to 22955 8375 mRNA_8: 8376 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 23178 to 26734 8376

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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22,251 + 8375 mRNA_7 0.75 -0.7
22,255 - 8375 mRNA_7 0.75 0.2
22,314 - 8375 mRNA_7 0.77 0.9
22,331 + 8375 mRNA_7 0.78 -0.3
22,673 + 8375 mRNA_7 0.90 0.4
22,695 - 1.1
22,731 + 0.5
22,779 - 0.4
22,899 - 0.5
23,070 + 1.8
23,108 - 1.1
23,157 + 0.5
23,410 + 1.0
23,414 + 3.3
23,414 + 1.4
23,468 + 1.3
23,574 + 8376 mRNA_8 0.11 1.0
23,579 - 8376 mRNA_8 0.11 1.5
23,680 + 8376 mRNA_8 0.14 1.7
23,808 + 8376 mRNA_8 0.18 0.9
23,867 - 8376 mRNA_8 0.19 -0.2
23,948 - 8376 mRNA_8 0.22 -0.1
24,036 - 8376 mRNA_8 0.24 -1.5
24,203 - 8376 mRNA_8 0.29 -0.2
24,208 - 8376 mRNA_8 0.29 -1.1
24,405 + 8376 mRNA_8 0.34 0.9
24,406 - 8376 mRNA_8 0.35 0.1
24,407 + 8376 mRNA_8 0.35 1.3
24,634 + 8376 mRNA_8 0.41 -0.4
24,636 - 8376 mRNA_8 0.41 1.0
24,650 - 8376 mRNA_8 0.41 0.5
24,748 + 8376 mRNA_8 0.44 2.6
24,837 - 8376 mRNA_8 0.47 1.3
24,935 + 8376 mRNA_8 0.49 -1.4
25,059 + 8376 mRNA_8 0.53 -0.7
25,103 - 8376 mRNA_8 0.54 -0.8
25,490 + 8376 mRNA_8 0.65 1.1
25,499 + 8376 mRNA_8 0.65 0.2
25,504 + 8376 mRNA_8 0.65 2.8
25,545 - 8376 mRNA_8 0.67 1.5
25,752 - 8376 mRNA_8 0.72 1.3
26,125 - 8376 mRNA_8 0.83 0.6
26,126 - 8376 mRNA_8 0.83 -0.0
26,245 - 8376 mRNA_8 0.86 -0.4
26,424 - 1.6
26,539 + 0.4
26,568 + 0.1
26,832 - -1.0
26,832 - 0.7
26,867 - 1.9
26,931 + -1.1
26,937 + 0.2
26,947 + 0.8
26,960 + 0.4
26,967 - 2.1
26,973 - -0.9
26,973 - -1.1
26,998 + -0.2
27,007 - 0.8
27,039 + -0.7
27,039 - 0.2
27,102 + 0.2
27,108 - 1.6
27,119 - -1.5
27,145 - -1.0
27,156 + 1.3
27,164 + -0.2
27,263 - 2.4
27,280 - -0.6
27,284 - 1.6
27,287 - -1.8
27,295 + 1.6
27,295 + -0.7
27,304 - 2.4
27,306 + 2.0
27,312 - 2.8
27,315 - 1.6
27,332 - -0.8
27,370 - 3.3
27,381 - 0.3
27,431 - 0.5
27,439 + 3.4
27,444 + 0.8
27,451 + 1.0
27,453 - 2.1