Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6: 8374 - SUPERFAMILY--SSF47676, at 13861 to 19221 8374 mRNA_7: 8375 - HMMPfam-LIM-domain binding protein-PF01803,PRINTS-Proline rich extensin signature-PR01217, at 20174 to 22955 8375 mRNA_8: 8376 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 23178 to 26734 8376

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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19,901 - 0.2
19,908 - 0.6
20,059 - -0.7
20,080 - 1.0
20,080 + 0.4
20,086 + 2.0
20,087 + 0.6
20,087 - 0.4
20,094 + -0.6
20,099 + -0.1
20,218 + 0.1
20,227 - -1.0
20,262 + 0.4
20,524 + 8375 mRNA_7 0.13 -0.0
20,549 - 8375 mRNA_7 0.13 0.9
20,664 + 8375 mRNA_7 0.18 -0.3
20,676 - 8375 mRNA_7 0.18 1.6
21,271 - 8375 mRNA_7 0.39 1.8
21,449 - 8375 mRNA_7 0.46 0.4
21,551 + 8375 mRNA_7 0.49 -0.7
21,578 + 8375 mRNA_7 0.50 -0.1
21,736 - 8375 mRNA_7 0.56 0.1
21,819 - 8375 mRNA_7 0.59 2.5
21,850 + 8375 mRNA_7 0.60 0.9
22,010 - 8375 mRNA_7 0.66 3.6
22,129 + 8375 mRNA_7 0.70 0.4
22,251 + 8375 mRNA_7 0.75 -0.7
22,255 - 8375 mRNA_7 0.75 0.2
22,314 - 8375 mRNA_7 0.77 0.9
22,331 + 8375 mRNA_7 0.78 -0.3
22,673 + 8375 mRNA_7 0.90 0.4
22,695 - 1.1
22,731 + 0.5
22,779 - 0.4
22,899 - 0.5
23,070 + 1.8
23,108 - 1.1
23,157 + 0.5
23,410 + 1.0
23,414 + 3.3
23,414 + 1.4
23,468 + 1.3
23,574 + 8376 mRNA_8 0.11 1.0
23,579 - 8376 mRNA_8 0.11 1.5
23,680 + 8376 mRNA_8 0.14 1.7
23,808 + 8376 mRNA_8 0.18 0.9
23,867 - 8376 mRNA_8 0.19 -0.2
23,948 - 8376 mRNA_8 0.22 -0.1