Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372 mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12047 to 13694 8373 mRNA_6: 8374 - SUPERFAMILY--SSF47676, at 13861 to 19221 8374

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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11,415 - 8372 mRNA_4 0.74 0.0
11,519 - 8372 mRNA_4 0.80 0.5
11,848 + 1.3
11,850 - 1.1
11,972 + -0.4
12,045 + -0.1
12,157 + 0.7
12,167 - -1.1
12,186 - 0.2
12,190 + 0.1
12,347 - 8373 mRNA_5 0.18 -0.5
12,460 + 8373 mRNA_5 0.25 0.5
12,560 + 8373 mRNA_5 0.31 2.4
12,571 + 8373 mRNA_5 0.32 1.8
12,576 - 8373 mRNA_5 0.32 -1.2
12,622 - 8373 mRNA_5 0.35 0.6
12,669 + 8373 mRNA_5 0.38 1.0
12,747 + 8373 mRNA_5 0.42 1.0
12,854 + 8373 mRNA_5 0.49 1.4
12,856 - 8373 mRNA_5 0.49 -0.9
13,000 + 8373 mRNA_5 0.58 1.1
13,103 - 8373 mRNA_5 0.64 0.8
13,133 - 8373 mRNA_5 0.66 0.9
13,202 + 8373 mRNA_5 0.70 2.5
13,404 + 8373 mRNA_5 0.82 0.3
13,578 + -1.0
13,700 + 0.7
13,752 - 0.2
13,753 + 1.0
13,839 + -1.8
13,938 + 0.5
13,998 + -0.2
14,325 - 0.4
14,378 - 1.0
14,384 + -0.8
14,441 - 8374 mRNA_6 0.11 -0.5
14,447 + 8374 mRNA_6 0.11 0.5
14,457 + 8374 mRNA_6 0.11 -0.0
14,479 + 8374 mRNA_6 0.12 0.3
14,583 - 8374 mRNA_6 0.13 -0.7