Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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595 + 0.5
609 - -1.5
637 - -0.9
651 + 2.2
654 + 0.7
659 - 0.5
663 + 0.2
672 - -1.3
673 + 0.9
685 + 0.1
725 + 0.4
790 - 0.1
791 + 0.1
798 + 1.3
798 + 0.1
804 - -0.6
821 + 0.6
860 + 1.5
899 - 0.6
916 + -1.0
939 + 0.8
957 + -0.9
975 - -0.3
976 + 0.5
996 - 0.9
1,005 + 1.1
1,005 - -1.6
1,007 - -0.4
1,052 + -1.8
1,058 + -0.6
1,070 + 0.9
1,113 - 2.8
1,115 - -0.3
1,117 + -0.2
1,207 + 0.3
1,257 + 1.0
1,285 - 2.1
1,359 - 0.3
1,422 + -0.6
1,960 + 8369 mRNA_1 0.44 1.3
2,268 + 8369 mRNA_1 0.79 -0.6
2,361 - 8369 mRNA_1 0.89 -1.3
2,441 + 0.4
2,550 + 1.0
2,552 - 0.2
2,564 + -0.5
2,701 + 2.4
2,839 - 1.9
2,853 + -0.6
2,946 - 1.7
3,005 - 0.7
3,125 - -0.4
3,136 + -1.0