Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8483

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8482: 16850 - K00854 xylB, XYLB xylulokinase, at 1328574 to 1331754 16850 mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1332455 to 1336946 16851 mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1337169 to 1338536 16852

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,331,553 + -0.4
1,331,672 + 0.3
1,331,770 - 0.7
1,331,834 + 0.7
1,331,893 + -0.0
1,331,958 + 0.3
1,331,961 - -1.3
1,332,064 - 0.4
1,332,110 - 2.6
1,332,111 - -1.8
1,332,236 - 1.0
1,332,244 + -0.8
1,332,255 + -1.1
1,332,255 + 1.2
1,332,255 + -0.5
1,332,257 - -1.9
1,332,351 + 1.0
1,332,382 + 0.1
1,332,395 + 1.7
1,332,489 + 1.8
1,332,497 + -0.2
1,332,633 + 0.7
1,332,813 + 0.9
1,332,856 - -1.5
1,333,158 - 16851 mRNA_8483 0.16 0.6
1,333,309 + 16851 mRNA_8483 0.19 0.3
1,333,338 + 16851 mRNA_8483 0.20 0.2
1,333,456 - 16851 mRNA_8483 0.22 0.8
1,333,477 + 16851 mRNA_8483 0.23 2.6
1,333,563 + 16851 mRNA_8483 0.25 0.4
1,333,588 + 16851 mRNA_8483 0.25 -2.2
1,333,631 - 16851 mRNA_8483 0.26 0.7
1,333,787 + 16851 mRNA_8483 0.30 0.3
1,333,896 + 16851 mRNA_8483 0.32 0.9
1,333,898 - 16851 mRNA_8483 0.32 0.8
1,333,978 - 16851 mRNA_8483 0.34 -2.3
1,334,034 - 16851 mRNA_8483 0.35 -0.2
1,334,040 + 16851 mRNA_8483 0.35 -0.7
1,334,048 + 16851 mRNA_8483 0.35 -0.9
1,334,101 - 16851 mRNA_8483 0.37 -0.7
1,334,168 + 16851 mRNA_8483 0.38 0.9
1,334,291 + 16851 mRNA_8483 0.41 0.3
1,334,294 - 16851 mRNA_8483 0.41 0.0
1,334,295 + 16851 mRNA_8483 0.41 0.1
1,334,517 + 16851 mRNA_8483 0.46 0.8
1,334,523 - 16851 mRNA_8483 0.46 1.1
1,334,626 - 16851 mRNA_8483 0.48 0.0
1,334,661 - 16851 mRNA_8483 0.49 0.1
1,334,751 + 16851 mRNA_8483 0.51 1.0
1,334,837 - 16851 mRNA_8483 0.53 1.3
1,334,843 - 16851 mRNA_8483 0.53 1.5
1,334,860 + 16851 mRNA_8483 0.54 1.1
1,334,867 - 16851 mRNA_8483 0.54 0.8
1,335,075 - 16851 mRNA_8483 0.58 -0.3
1,335,112 - 16851 mRNA_8483 0.59 2.4
1,335,146 - 16851 mRNA_8483 0.60 0.3
1,335,272 + 16851 mRNA_8483 0.63 -1.0
1,335,432 + 16851 mRNA_8483 0.66 0.7
1,335,553 + 16851 mRNA_8483 0.69 0.6
1,335,952 + 16851 mRNA_8483 0.78 -0.7
1,335,962 - 16851 mRNA_8483 0.78 -0.3
1,336,113 + 16851 mRNA_8483 0.81 1.6
1,336,285 - 16851 mRNA_8483 0.85 1.4
1,336,305 + 16851 mRNA_8483 0.86 -0.3
1,336,308 + 16851 mRNA_8483 0.86 -2.2
1,336,431 - 16851 mRNA_8483 0.89 0.2
1,336,438 - 16851 mRNA_8483 0.89 -0.8
1,336,446 + 16851 mRNA_8483 0.89 -0.1
1,336,523 - -0.9
1,336,527 + -0.1
1,336,738 - 0.9
1,336,999 + 0.4
1,336,999 + 0.1
1,337,004 - -0.4
1,337,028 + 1.9
1,337,075 - 0.3
1,337,081 - 1.6
1,337,088 + 1.1
1,337,134 + 1.2
1,337,153 + 2.3
1,337,245 - -0.2
1,337,266 + -1.3
1,337,269 + 1.2
1,337,269 + -0.4
1,337,291 - 0.0
1,337,352 - 16852 mRNA_8484 0.13 0.8
1,337,361 + 16852 mRNA_8484 0.14 1.4
1,337,416 - 16852 mRNA_8484 0.18 0.5
1,337,475 + 16852 mRNA_8484 0.22 0.0
1,337,613 + 16852 mRNA_8484 0.32 1.9
1,337,860 - 16852 mRNA_8484 0.51 0.4
1,337,861 + 16852 mRNA_8484 0.51 -0.7