Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8462

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1290366 to 1291802 16829 mRNA_8462: 16830 - Hypothetical Protein, at 1292206 to 1292868 16830

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,291,439 - 16829 mRNA_8461 0.75 1.0
1,291,619 - 16829 mRNA_8461 0.87 -0.2
1,291,776 + 2.3
1,291,797 + -1.5
1,291,837 - 0.8
1,291,864 - 0.6
1,291,891 + -0.5
1,292,018 + 2.1
1,292,026 + -0.4
1,292,030 - 0.3
1,292,031 + -0.8
1,292,179 - 1.5
1,292,184 + -0.1
1,292,188 - -0.8
1,292,193 - 3.3
1,292,196 + 2.4
1,292,341 + 16830 mRNA_8462 0.20 0.0
1,292,349 - 16830 mRNA_8462 0.22 0.9
1,292,351 - 16830 mRNA_8462 0.22 0.5
1,292,351 - 16830 mRNA_8462 0.22 -0.1
1,292,351 - 16830 mRNA_8462 0.22 0.0
1,292,355 - 16830 mRNA_8462 0.22 1.8
1,292,361 + 16830 mRNA_8462 0.23 0.7
1,292,376 + 16830 mRNA_8462 0.26 0.2
1,292,457 + 16830 mRNA_8462 0.38 -0.1
1,292,493 - 16830 mRNA_8462 0.43 1.5
1,292,500 - 16830 mRNA_8462 0.44 2.0
1,292,501 + 16830 mRNA_8462 0.44 1.9
1,292,512 + 16830 mRNA_8462 0.46 0.4
1,292,635 - 16830 mRNA_8462 0.65 -0.1
1,292,639 - 16830 mRNA_8462 0.65 0.9
1,292,659 + 16830 mRNA_8462 0.68 0.8
1,292,811 - -1.0
1,292,813 - 2.5
1,292,854 + 0.8
1,292,863 + 1.6
1,292,918 - 0.1
1,292,956 + -1.3
1,292,961 - 2.4
1,292,974 - -0.0
1,292,977 + 0.1
1,292,981 + 0.6
1,292,983 - -1.6
1,293,045 + 0.7
1,293,074 - -0.1
1,293,090 + 0.1
1,293,098 - -0.4
1,293,107 + -0.9
1,293,135 - 2.3
1,293,137 - 1.1
1,293,140 - -1.0
1,293,153 + -0.4
1,293,169 + -1.6
1,293,170 + 2.6
1,293,182 + -0.3
1,293,223 + 2.2
1,293,237 + -0.1
1,293,250 + 0.1
1,293,273 - -0.5
1,293,281 - 0.9
1,293,304 - 2.1
1,293,318 + 0.4
1,293,318 + -0.7
1,293,356 - -1.5
1,293,364 - -0.1
1,293,397 - -0.1
1,293,399 - -1.7
1,293,406 - -1.0
1,293,419 - 2.7
1,293,421 - -0.1
1,293,433 + 2.4
1,293,433 - 1.4
1,293,434 + 0.2
1,293,435 - -0.4
1,293,455 + -0.8
1,293,495 - 1.5
1,293,525 - -0.4
1,293,531 - -0.1
1,293,548 - -0.1
1,293,549 + -0.0
1,293,549 + 0.5
1,293,553 + 1.7
1,293,556 + -1.4
1,293,558 + 1.3
1,293,563 + -0.3
1,293,619 + 0.3
1,293,619 + 0.3
1,293,686 + -1.2
1,293,710 - -0.4
1,293,725 - 0.1
1,293,752 - 3.7
1,293,868 - 0.7