Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8410

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8409: 16777 - K09667 OGT protein O-GlcNAc transferase, at 1148634 to 1155172 16777 mRNA_8410: 16778 - K12761 SNF1 carbon catabolite-derepressing protein kinase, at 1155634 to 1159160 16778 mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1159306 to 1160640 16779

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,154,835 - 0.6
1,154,978 - 0.1
1,154,997 + -0.4
1,155,005 + 0.7
1,155,028 - -1.2
1,155,151 + -0.5
1,155,152 + 1.4
1,155,161 + -0.2
1,155,164 - -1.0
1,155,169 + -0.9
1,155,175 - -0.6
1,155,274 - -0.7
1,155,294 - 1.1
1,155,366 + 2.3
1,155,446 + 2.9
1,155,452 - -1.2
1,155,452 + -0.7
1,155,452 + 0.3
1,155,462 + 2.9
1,155,464 + -0.2
1,155,475 - 0.5
1,155,477 + -0.9
1,155,566 + 0.9
1,155,572 - 1.3
1,155,573 - 0.7
1,155,580 - 1.4
1,155,580 - 1.0
1,155,581 - 0.3
1,155,581 - 0.8
1,155,584 + 1.2
1,155,586 + 0.6
1,155,595 + 0.2
1,155,602 + 1.5
1,155,603 - 0.4
1,155,604 + 0.3
1,155,624 + 0.0
1,155,742 + -1.9
1,155,892 + 1.2
1,155,894 + 3.8
1,155,899 - 2.0
1,155,913 + 0.9
1,155,914 - 0.0
1,156,793 + 16778 mRNA_8410 0.33 1.2
1,156,921 + 16778 mRNA_8410 0.36 0.8
1,157,789 + 16778 mRNA_8410 0.61 -0.5
1,157,960 + 16778 mRNA_8410 0.66 1.3
1,158,456 - 16778 mRNA_8410 0.80 1.8
1,158,750 + 16778 mRNA_8410 0.88 0.5
1,158,782 - 16778 mRNA_8410 0.89 0.4
1,159,087 + -0.6
1,159,268 + -0.1
1,159,292 + -0.3
1,159,361 + 2.4
1,159,506 + 16779 mRNA_8411 0.15 -0.2
1,159,628 - 16779 mRNA_8411 0.24 -0.1
1,159,660 - 16779 mRNA_8411 0.27 0.3
1,159,661 - 16779 mRNA_8411 0.27 -0.6
1,159,751 - 16779 mRNA_8411 0.33 1.4
1,159,824 - 16779 mRNA_8411 0.39 0.7
1,159,982 + 16779 mRNA_8411 0.51 -0.3
1,160,032 + 16779 mRNA_8411 0.54 1.2
1,160,072 + 16779 mRNA_8411 0.57 0.8
1,160,134 - 16779 mRNA_8411 0.62 0.7