Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8376

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8375: 16743 - HMMPfam-Velvet factor-PF11754, at 1064293 to 1065552 16743 mRNA_8376: 16744 - Hypothetical Protein, at 1065771 to 1066578 16744 mRNA_8377: 16745 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 1066726 to 1069498 16745

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,064,888 - 16743 mRNA_8375 0.47 0.8
1,065,071 - 16743 mRNA_8375 0.62 0.4
1,065,106 - 16743 mRNA_8375 0.65 -0.3
1,065,381 - 16743 mRNA_8375 0.86 -1.2
1,065,636 - 1.7
1,065,669 + 2.0
1,065,670 - 0.5
1,065,742 + -1.6
1,065,784 - 2.4
1,065,795 - 0.2
1,066,372 + 16744 mRNA_8376 0.74 -0.6
1,066,661 + 0.3
1,066,676 - 0.8
1,066,792 + 2.0
1,066,953 - 1.3
1,067,225 + 16745 mRNA_8377 0.18 1.0
1,067,355 - 16745 mRNA_8377 0.23 -0.9