Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8368

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8367: 16735 - Hypothetical Protein, at 1046951 to 1048222 16735 mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1048733 to 1050184 16736 mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1050307 to 1054065 16737

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,047,795 + 16735 mRNA_8367 0.66 1.2
1,047,795 + 16735 mRNA_8367 0.66 -0.2
1,047,931 - 16735 mRNA_8367 0.77 0.1
1,047,937 + 16735 mRNA_8367 0.78 0.5
1,047,946 - 16735 mRNA_8367 0.78 -1.7
1,047,949 + 16735 mRNA_8367 0.78 1.5
1,047,952 - 16735 mRNA_8367 0.79 -0.5
1,048,080 + 16735 mRNA_8367 0.89 -2.6
1,048,082 - 16735 mRNA_8367 0.89 1.3
1,048,106 - 1.0
1,048,114 - 1.4
1,048,219 + 0.3
1,048,229 - 0.6
1,048,253 + -0.7
1,048,274 + -0.5
1,048,374 + 0.8
1,048,374 + 3.2
1,048,374 + 1.3
1,048,381 + -0.4
1,048,385 + -0.2
1,048,386 + -0.8
1,048,391 - -0.2
1,048,393 + -0.1
1,048,394 - 2.9
1,048,413 + -0.3
1,048,425 + -1.6
1,048,425 - -0.5
1,048,512 - -0.3
1,048,543 + 0.4
1,048,547 + 0.7
1,048,548 - 2.1
1,048,559 - 2.7
1,048,560 + 1.2
1,048,566 - 0.9
1,048,566 - -0.4
1,048,568 - 2.3
1,048,570 + 0.1
1,048,577 + 2.1
1,048,716 + 0.9
1,049,075 - 16736 mRNA_8368 0.24 -1.1
1,049,076 + 16736 mRNA_8368 0.24 -0.1
1,049,357 - 16736 mRNA_8368 0.43 1.8
1,049,458 - 16736 mRNA_8368 0.50 1.2
1,049,765 + 16736 mRNA_8368 0.71 -1.5
1,049,779 + 16736 mRNA_8368 0.72 -0.4
1,050,154 - -0.4
1,050,156 + 0.8
1,050,605 - 0.4