Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8359

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8358: 16726 - HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657, at 1023187 to 1029066 16726 mRNA_8359: 16727 - Hypothetical Protein, at 1029156 to 1031168 16727 mRNA_8360: 16728 - K02739 PSMB7 20S proteasome subunit beta 2, at 1031213 to 1032623 16728

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,028,334 + 16726 mRNA_8358 0.88 2.1
1,028,380 + 16726 mRNA_8358 0.88 0.0
1,028,391 - 16726 mRNA_8358 0.89 0.6
1,028,402 - 16726 mRNA_8358 0.89 2.4
1,028,450 + 16726 mRNA_8358 0.90 0.6
1,028,458 + 16726 mRNA_8358 0.90 -0.6
1,028,472 + 16726 mRNA_8358 0.90 2.6
1,028,495 + -1.9
1,028,551 - 1.5
1,028,635 + 1.0
1,028,753 + 0.5
1,028,763 - 0.7
1,028,873 + 1.1
1,028,924 - 0.6
1,029,147 + 0.3
1,029,365 + 16727 mRNA_8359 0.10 0.9
1,029,617 - 16727 mRNA_8359 0.23 0.3
1,029,781 + 16727 mRNA_8359 0.31 1.0
1,029,783 + 16727 mRNA_8359 0.31 1.4
1,029,906 - 16727 mRNA_8359 0.37 0.4
1,030,133 + 16727 mRNA_8359 0.49 -1.3
1,030,260 + 16727 mRNA_8359 0.55 0.7
1,030,577 - 16727 mRNA_8359 0.71 2.4
1,030,646 + 16727 mRNA_8359 0.74 1.2
1,030,776 - 16727 mRNA_8359 0.80 -0.7
1,030,887 + 16727 mRNA_8359 0.86 0.1
1,031,067 - -0.2
1,031,069 + 3.6
1,031,086 + 1.0
1,031,199 - 1.1
1,031,199 - -0.2
1,031,221 - 2.3
1,031,340 - 0.2
1,031,341 + 1.1
1,031,354 - 16728 mRNA_8360 0.10 0.7
1,031,363 + 16728 mRNA_8360 0.11 1.7
1,031,368 + 16728 mRNA_8360 0.11 0.6
1,031,372 - 16728 mRNA_8360 0.11 0.3
1,031,378 + 16728 mRNA_8360 0.12 -0.3
1,031,395 - 16728 mRNA_8360 0.13 0.9