Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8336

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964932 to 965872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968158 to 970145 16705

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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965,315 + 16703 mRNA_8335 0.41 -0.0
965,322 + 16703 mRNA_8335 0.41 0.6
965,333 + 16703 mRNA_8335 0.43 0.5
965,338 + 16703 mRNA_8335 0.43 0.0
965,345 + 16703 mRNA_8335 0.44 -0.1
965,356 + 16703 mRNA_8335 0.45 0.6
965,470 - 16703 mRNA_8335 0.57 -0.6
965,488 - 16703 mRNA_8335 0.59 0.9
965,499 + 16703 mRNA_8335 0.60 0.1
965,510 + 16703 mRNA_8335 0.61 -0.2
965,627 + 16703 mRNA_8335 0.74 0.5
965,816 - -0.6
965,897 + -0.8
965,907 + -0.9
966,078 + 0.8
966,352 - 0.3
966,357 + -0.1
966,378 + 16704 mRNA_8336 0.10 -1.4
966,485 - 16704 mRNA_8336 0.18 0.2
966,512 + 16704 mRNA_8336 0.19 0.1
967,071 + 16704 mRNA_8336 0.56 1.0
967,092 - 16704 mRNA_8336 0.57 0.2
967,215 + 16704 mRNA_8336 0.66 0.2
967,236 + 16704 mRNA_8336 0.67 0.5
967,279 + 16704 mRNA_8336 0.70 -0.0
967,504 + 16704 mRNA_8336 0.85 0.3
967,657 + 0.6
967,666 + 0.3
967,796 + -0.5
967,803 - 2.6
967,807 - 1.4
967,809 + -0.6
967,811 - 0.1
967,813 + 1.5
967,815 - 0.4
967,837 - 0.8
967,850 + -0.8
967,861 + 0.4
967,863 - 0.6
968,012 + 2.2
968,034 - 0.5
968,128 - -0.7
968,435 - 16705 mRNA_8337 0.14 1.9
968,608 - 16705 mRNA_8337 0.23 0.7
968,717 + 16705 mRNA_8337 0.28 1.1