Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8335

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8334: 16702 - BLAST mtf1_muccl ame full transcription factor mtf1 [Licht..., at 961362 to 964238 16702 mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964932 to 965872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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963,982 + 2.4
964,148 - 0.2
964,156 - 2.0
964,248 + -0.7
964,264 + 1.8
964,279 - -0.3
964,316 - -2.1
964,425 - -0.6
964,430 - -0.9
964,447 - 0.6
964,449 - 1.1
964,455 - -0.8
964,458 - 0.7
964,598 - 1.8
964,599 - 0.1
964,600 - -1.7
964,601 - -1.6
964,606 - 0.5
964,606 - 0.5
964,608 - 1.4
964,612 - 0.7
964,616 + 0.2
964,617 + -0.1
964,618 + 0.0
964,634 + 0.4
964,786 - -0.1
964,796 + 0.1
964,798 + 0.7
964,840 - 0.9
964,840 - -2.2
964,846 + 0.2
964,850 + 2.9
964,855 + 1.7
964,856 + 1.5
964,865 - 0.3
964,866 + 1.4
964,866 + 0.1
964,870 + -0.2
964,875 - 0.4
964,877 - 0.3
964,887 + 1.5
965,048 - 16703 mRNA_8335 0.12 -0.1
965,135 - 16703 mRNA_8335 0.22 2.0
965,147 - 16703 mRNA_8335 0.23 -0.1
965,151 - 16703 mRNA_8335 0.23 -0.3
965,156 + 16703 mRNA_8335 0.24 0.5
965,178 - 16703 mRNA_8335 0.26 -0.1
965,315 + 16703 mRNA_8335 0.41 -0.0
965,322 + 16703 mRNA_8335 0.41 0.6
965,333 + 16703 mRNA_8335 0.43 0.5
965,338 + 16703 mRNA_8335 0.43 0.0
965,345 + 16703 mRNA_8335 0.44 -0.1
965,356 + 16703 mRNA_8335 0.45 0.6
965,470 - 16703 mRNA_8335 0.57 -0.6
965,488 - 16703 mRNA_8335 0.59 0.9
965,499 + 16703 mRNA_8335 0.60 0.1
965,510 + 16703 mRNA_8335 0.61 -0.2
965,627 + 16703 mRNA_8335 0.74 0.5
965,816 - -0.6
965,897 + -0.8
965,907 + -0.9
966,078 + 0.8
966,352 - 0.3
966,357 + -0.1
966,378 + 16704 mRNA_8336 0.10 -1.4
966,485 - 16704 mRNA_8336 0.18 0.2
966,512 + 16704 mRNA_8336 0.19 0.1