Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8330

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950835 to 951817 16697 mRNA_8330: 16698 - BLAST clp1-like protein [Schizophyllum commune H4-8], at 951883 to 952795 16698

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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950,953 + 16697 mRNA_8329 0.12 -0.3
951,119 - 16697 mRNA_8329 0.29 -0.7
951,860 - 1.4
952,185 + 16698 mRNA_8330 0.33 0.6
952,214 - 16698 mRNA_8330 0.36 0.1
952,306 - 16698 mRNA_8330 0.46 -0.1
952,326 - 16698 mRNA_8330 0.49 1.5
952,471 - 16698 mRNA_8330 0.64 -1.3
952,479 + 16698 mRNA_8330 0.65 -0.9
952,479 - 16698 mRNA_8330 0.65 0.2
952,565 + 16698 mRNA_8330 0.75 0.2
952,600 + 16698 mRNA_8330 0.79 1.7
952,627 - 16698 mRNA_8330 0.81 0.0
952,736 - 2.9
952,741 + 1.0
952,759 + 1.0
952,768 + -0.8
952,889 - 0.8
952,892 - 0.9
952,892 - 1.7
952,909 + 0.2
952,915 + -0.8
952,919 + 0.8
952,941 + 1.3
952,953 - -0.1
952,963 + -0.1
953,046 - 0.5
953,227 - -0.3
953,234 + 0.6
953,257 + 2.1
953,274 + -0.2
953,362 - 1.8
953,382 - -1.2
953,408 - 1.9
953,697 + -0.3