Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8324

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8323: 16691 - HMMPfam-Abscisic acid G-protein coupled receptor-PF12430,HMMPfam-Protein of unknown function (DUF3735)-PF12537, at 938985 to 941043 16691 mRNA_8324: 16692 - K14026 SEL1, SEL1L SEL1 protein, at 941199 to 945074 16692 mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945635 to 946237 16693

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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940,380 - 16691 mRNA_8323 0.68 0.1
940,523 + 16691 mRNA_8323 0.75 0.9
940,551 + 16691 mRNA_8323 0.76 -0.3
940,784 - 16691 mRNA_8323 0.87 1.1
940,785 - 16691 mRNA_8323 0.87 -0.2
940,828 + 16691 mRNA_8323 0.90 1.2
940,844 + 0.6
940,916 + 1.7
940,940 + 1.5
940,980 + -0.6
941,079 + -0.1
941,081 - -0.7
941,131 - 0.8
941,134 + -0.6
941,149 + 1.0
941,427 + 1.6
941,431 + -1.1
941,833 - 16692 mRNA_8324 0.16 -2.0
941,833 + 16692 mRNA_8324 0.16 0.1
942,001 - 16692 mRNA_8324 0.21 1.6
942,596 + 16692 mRNA_8324 0.36 1.0
943,339 - 16692 mRNA_8324 0.55 -0.5
943,499 - 16692 mRNA_8324 0.59 0.9
943,625 - 16692 mRNA_8324 0.63 -1.7
943,777 + 16692 mRNA_8324 0.67 -0.6
944,361 - 16692 mRNA_8324 0.82 -2.3
944,643 - 16692 mRNA_8324 0.89 1.5
944,803 + -1.2
945,120 + 1.5
945,430 + 1.1
945,995 - 16693 mRNA_8325 0.60 -1.5