Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8299

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8298: 16666 - K02858 ribB, RIB3 3,4-dihydroxy 2-butanone 4-phosphate synthase, at 877941 to 878924 16666 mRNA_8299: 16667 - Hypothetical Protein, at 879552 to 881168 16667 mRNA_8300: 16668 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13640,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SMART-Prolyl 4-hydroxylase alpha subunit homologues.-SM00702, at 881221 to 882082 16668

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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878,964 + -1.0
878,971 - 1.1
878,990 + 1.1
878,994 + 2.9
878,998 - 0.5
878,999 + 0.1
879,000 - 1.5
879,012 + 0.4
879,018 + -0.2
879,125 - -0.6
879,135 + 0.6
879,157 + 0.4
879,172 + 0.7
879,214 - 0.1
879,215 + 1.1
879,215 + 0.2
879,233 + -2.1
879,237 + 1.4
879,237 + 2.4
879,246 + -0.0
879,249 - 0.1
879,250 + -0.5
879,252 + -0.8
879,256 + 0.0
879,300 - 1.0
879,302 - -1.0
879,324 - 0.1
879,324 - -1.1
879,352 + 1.0
879,408 - -1.3
879,408 + 0.1
879,409 - 0.1
879,410 + -0.8
879,426 - -1.0
879,427 + -1.0
879,434 - 2.2
879,436 - -0.7
879,452 - 1.8
879,456 + -0.8
879,457 + -0.5
879,495 + -0.5
879,639 + 1.3
879,774 - 16667 mRNA_8299 0.14 1.2
879,808 + 16667 mRNA_8299 0.16 1.0
880,050 - 16667 mRNA_8299 0.31 2.2
880,187 - 16667 mRNA_8299 0.39 2.3
880,191 - 16667 mRNA_8299 0.40 0.8
880,329 + 16667 mRNA_8299 0.48 0.3
880,497 + 16667 mRNA_8299 0.58 -0.7
880,642 - 16667 mRNA_8299 0.67 0.9
880,825 + 16667 mRNA_8299 0.79 0.3
881,068 - -0.5
881,076 - -0.2
881,116 - -0.8
881,209 + -1.1
881,220 + 2.0
881,254 + -0.1
881,353 + 16668 mRNA_8300 0.15 0.0
881,357 + 16668 mRNA_8300 0.16 0.0
881,498 + 16668 mRNA_8300 0.32 0.2
881,520 - 16668 mRNA_8300 0.35 0.4
881,645 - 16668 mRNA_8300 0.49 0.5
881,654 + 16668 mRNA_8300 0.50 1.0
881,656 - 16668 mRNA_8300 0.50 2.1
881,668 + 16668 mRNA_8300 0.52 0.3
881,692 - 16668 mRNA_8300 0.55 2.5
881,958 - 16668 mRNA_8300 0.85 0.4
882,108 - 0.7
882,136 - 0.3