Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8292

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863269 to 864250 16659 mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864726 to 865561 16660 mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865837 to 868084 16661

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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863,854 + 16659 mRNA_8291 0.60 0.5
864,104 - 16659 mRNA_8291 0.85 -0.6
864,117 + 16659 mRNA_8291 0.86 0.3
864,232 + -0.2
864,236 + -0.2
864,377 - -0.8
864,398 - -1.5
864,410 - 0.3
864,413 + 0.5
864,535 + 0.2
864,555 + 0.5
864,612 + -0.2
864,660 - 1.3
864,715 - 0.3
864,831 + 16660 mRNA_8292 0.13 2.3
864,864 + 16660 mRNA_8292 0.17 -0.3
864,867 - 16660 mRNA_8292 0.17 1.3
864,870 - 16660 mRNA_8292 0.17 0.2
864,876 - 16660 mRNA_8292 0.18 1.5
864,898 + 16660 mRNA_8292 0.21 -1.4
864,981 + 16660 mRNA_8292 0.31 0.3
865,030 + 16660 mRNA_8292 0.36 1.0
865,094 + 16660 mRNA_8292 0.44 2.2
865,297 + 16660 mRNA_8292 0.68 2.0
865,338 + 16660 mRNA_8292 0.73 -1.0
865,417 + 16660 mRNA_8292 0.83 0.0
865,727 - 2.6
865,881 + -0.3
865,904 + 0.7
866,010 - 1.0
866,010 - 1.0