Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8276

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8275: 16643 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 820228 to 822470 16643 mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822982 to 824358 16644 mRNA_8277: 16645 - Hypothetical Protein, at 824512 to 825100 16645

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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822,191 - 16643 mRNA_8275 0.88 1.8
822,211 - 16643 mRNA_8275 0.88 -1.7
822,229 - 16643 mRNA_8275 0.89 0.0
822,234 + 16643 mRNA_8275 0.89 -0.6
822,369 + 0.6
822,374 + -0.9
822,395 - 3.0
822,487 - -1.8
822,525 + 1.3
822,661 + 0.9
822,763 - 1.7
822,776 - 1.0
822,776 - 0.4
822,785 + 0.4
822,791 + -0.9
822,795 + 1.0
822,796 - 1.7
822,800 - -1.2
822,804 - 1.8
822,938 - 0.1
822,940 - 0.3
822,947 + -0.1
822,955 - -0.3
822,955 + 0.4
822,956 - 2.0
822,969 + -0.6
822,969 + -0.4
822,973 + -0.0
823,080 - 0.5
823,083 + -0.6
823,085 - 2.5
823,094 - 0.1
823,096 - 0.4
823,104 + 0.7
823,108 + 0.3
823,110 + -0.1
823,110 + 1.0
823,115 - -0.2
823,116 - 0.3
823,116 - -0.3
823,122 + 16644 mRNA_8276 0.10 -1.3
823,137 - 16644 mRNA_8276 0.11 0.2
823,144 + 16644 mRNA_8276 0.12 0.5
823,233 - 16644 mRNA_8276 0.18 0.5
823,254 + 16644 mRNA_8276 0.20 2.8
823,272 - 16644 mRNA_8276 0.21 -0.4
823,275 - 16644 mRNA_8276 0.21 0.5
823,280 + 16644 mRNA_8276 0.22 0.3
823,291 - 16644 mRNA_8276 0.22 2.2
823,307 + 16644 mRNA_8276 0.24 0.0
823,409 - 16644 mRNA_8276 0.31 1.0
823,530 - 16644 mRNA_8276 0.40 -0.3
823,562 + 16644 mRNA_8276 0.42 0.4
823,727 + 16644 mRNA_8276 0.54 -0.0
823,731 - 16644 mRNA_8276 0.54 1.7
823,828 - 16644 mRNA_8276 0.61 -0.1
823,884 + 16644 mRNA_8276 0.66 -0.0
823,946 + 16644 mRNA_8276 0.70 0.4
823,997 + 16644 mRNA_8276 0.74 -0.1
824,003 - 16644 mRNA_8276 0.74 0.7
824,027 + 16644 mRNA_8276 0.76 -0.3
824,033 + 16644 mRNA_8276 0.76 0.7
824,105 + 16644 mRNA_8276 0.82 -0.1
824,136 + 16644 mRNA_8276 0.84 0.5
824,305 + -0.4
824,310 - 1.3
824,563 - 1.4
824,719 - 16645 mRNA_8277 0.35 0.6
824,741 - 16645 mRNA_8277 0.39 0.9
824,883 + 16645 mRNA_8277 0.63 0.2
825,269 - -0.7
825,281 - -0.1