Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8263

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792361 to 796882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797648 to 800551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800850 to 802295 16632

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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796,756 + -0.4
796,770 + -0.7
796,773 - 0.6
796,793 - -0.1
796,809 + -1.8
796,906 - 1.2
796,906 + 2.9
796,926 + -1.2
796,939 + 0.4
796,944 - 2.2
796,956 + -0.6
797,053 - 0.5
797,057 - 0.8
797,082 - 2.4
797,084 + -0.0
797,087 - -2.6
797,090 + 2.4
797,112 - 0.6
797,221 + 1.7
797,222 + 0.4
797,223 - -0.7
797,238 - 0.2
797,251 - 0.8
797,275 + 3.0
797,283 - 3.6
797,284 + -0.5
797,288 - 1.4
797,300 + -0.2
797,301 + -0.3
797,319 - 0.5
797,321 - -0.5
797,356 + 0.3
797,360 - -1.7
797,361 - -0.6
797,376 - 1.7
797,377 + 1.0
797,389 - 0.3
797,408 + 0.7
797,413 - 0.6
797,415 + 0.8
797,424 + 1.7
797,714 - -0.4
797,863 - 2.2
797,872 - 1.1
797,890 + 0.9
798,027 + 16631 mRNA_8263 0.13 0.1
798,299 - 16631 mRNA_8263 0.22 2.4
798,593 - 16631 mRNA_8263 0.33 -1.2
798,847 + 16631 mRNA_8263 0.41 2.2
799,171 - 16631 mRNA_8263 0.52 -0.2
799,718 + 16631 mRNA_8263 0.71 0.6
800,021 - 16631 mRNA_8263 0.82 2.3
800,035 + 16631 mRNA_8263 0.82 0.9
800,188 + 16631 mRNA_8263 0.87 1.5
800,300 - 1.8
800,626 - -0.1
800,648 + 0.1
801,024 + 16632 mRNA_8264 0.12 -1.7
801,195 + 16632 mRNA_8264 0.24 0.6
801,226 - 16632 mRNA_8264 0.26 1.0