Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8239

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607 mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740976 to 744696 16608

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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737,317 + 16606 mRNA_8238 0.42 -0.3
737,472 + 16606 mRNA_8238 0.57 0.0
737,573 - 16606 mRNA_8238 0.67 2.5
737,618 + 16606 mRNA_8238 0.71 0.1
737,725 - 16606 mRNA_8238 0.81 -0.7
737,832 - 0.9
737,838 + -0.0
737,849 - 2.5
737,854 + 1.9
737,857 - 0.7
737,868 + -0.1
737,900 + -0.3
737,902 - 0.2
737,957 + 1.3
737,975 - 0.6
737,976 - 1.0
737,979 + -0.1
737,987 + 0.8
737,989 - 0.5
737,994 - 2.0
738,011 + 0.9
738,016 + 0.4
738,027 - 1.7
738,045 + -0.4
738,048 - -0.7
738,050 - -1.1
738,054 + -2.3
738,072 - -1.2
738,135 + 0.8
738,174 - 0.2
738,179 + 1.1
738,204 - -0.2
738,207 + -0.3
738,215 + 0.3
738,337 + 1.0
738,473 + 16607 mRNA_8239 0.11 0.2
738,488 + 16607 mRNA_8239 0.11 -0.5
738,618 - 16607 mRNA_8239 0.17 -2.0
739,050 - 16607 mRNA_8239 0.34 -1.7
739,210 + 16607 mRNA_8239 0.41 -0.1
739,229 - 16607 mRNA_8239 0.41 -1.4
739,343 + 16607 mRNA_8239 0.46 -1.2
739,930 - 16607 mRNA_8239 0.70 -0.1
740,086 - 16607 mRNA_8239 0.76 -0.0
740,230 + 16607 mRNA_8239 0.82 -2.6
740,522 - 0.9
740,662 + 2.7
740,685 + 0.2
740,809 - 1.3
740,811 - 1.5
740,819 - 2.8
740,834 - 1.1
740,946 + -1.6
740,984 - 1.9
741,123 + 0.8
741,435 - 16608 mRNA_8240 0.12 1.1