Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8216

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8215: 16583 - ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 684650 to 685960 16583 mRNA_8216: 16584 - K14376 PAP poly(A) polymerase, at 686292 to 689011 16584 mRNA_8217: 16585 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 689708 to 696121 16585

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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685,424 + 16583 mRNA_8215 0.59 1.0
685,711 + 16583 mRNA_8215 0.81 0.7
685,712 - 16583 mRNA_8215 0.81 0.6
685,712 + 16583 mRNA_8215 0.81 -0.4
685,712 - 16583 mRNA_8215 0.81 -0.7
685,854 - -1.0
685,996 + 3.4
686,002 + 3.2
686,014 + 1.7
686,018 - 0.1
686,039 + 0.2
686,162 - 1.1
686,341 + 0.0
686,757 + 16584 mRNA_8216 0.17 -0.0
686,893 + 16584 mRNA_8216 0.22 -1.2
689,088 - 1.6
689,092 + -0.3
689,098 + 0.9
689,209 - 1.1
689,219 - 0.2
689,240 + 0.2
689,250 + 2.9
689,256 - -0.6
689,383 - 0.1
689,384 + -0.0