Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8210

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8209: 16577 - K17618 UBLCP1 ubiquitin-like domain-containing CTD phosphatase 1, at 674405 to 676070 16577 mRNA_8210: 16578 - BLAST WetA [Penicillium camemberti], at 676267 to 678027 16578

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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675,373 - 16577 mRNA_8209 0.58 -0.6
675,672 - 16577 mRNA_8209 0.76 -0.6
675,689 + 16577 mRNA_8209 0.77 1.3
675,805 - 16577 mRNA_8209 0.84 -0.3
675,818 - 16577 mRNA_8209 0.85 2.7
675,822 + 16577 mRNA_8209 0.85 1.7
675,966 - -0.1
675,975 - 4.7
676,113 - 0.4
676,117 - -0.3
676,121 + 0.0
676,125 - 1.0
676,132 + 0.2
676,134 - -1.2
676,157 + -0.8
676,157 - -0.3
676,458 + 16578 mRNA_8210 0.11 0.3
676,878 - 16578 mRNA_8210 0.35 0.6
677,204 + 16578 mRNA_8210 0.53 0.5
677,730 - 16578 mRNA_8210 0.83 -0.5
677,883 - 0.5
677,937 + -0.8
677,959 + 1.9
678,097 - 0.7
678,153 + 1.7
678,166 - 0.3
678,192 - -0.1
678,207 - -1.6
678,232 + -0.1
678,286 - 0.2
678,319 - 0.3
678,330 - -0.0
678,363 + -0.4
678,364 - 0.9
678,367 - -1.3
678,367 - -0.1
678,370 + 1.0
678,373 - 0.6
678,375 - -0.0
678,399 - 1.5
678,412 - 1.3
678,419 + -0.2
678,427 + 0.5
678,524 + -0.6
678,549 - 0.8
678,688 + 0.0
678,695 + -2.0
678,697 - 0.8
678,703 + 0.6
678,725 + 0.5
678,772 + -0.0
678,839 - -0.6
678,849 - -2.2
678,859 + 1.1
678,982 - 0.5
679,000 - -0.0
679,009 - -0.2
679,024 - 2.8